Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030194 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 3.7e-93 344.7 162 100.0
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 3.2e-36 155.6 86 82.6
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 5.5e-36 154.8 86 81.4
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 7.2e-36 154.5 86 81.4
Lj8C53G16 Lonicera japonica HOM05D003369 ORTHO05D004089 1.2e-35 153.7 86 80.2
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.2e-35 153.7 86 81.4
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.6e-35 153.3 86 81.4
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.1e-35 152.9 95 72.6
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 2.1e-35 152.9 95 72.6
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 2.7e-35 152.5 86 79.1
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.7e-35 152.5 86 80.2
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 6.1e-35 151.4 86 76.7
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 7.9e-35 151.0 86 81.4
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 7.9e-35 151.0 86 79.1
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 1.0e-34 150.6 86 77.9
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.4e-34 150.2 86 76.7
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 2.3e-34 149.4 86 77.9
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.3e-34 149.4 86 75.6
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 2.3e-34 149.4 86 75.6
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 3.0e-34 149.1 86 76.7
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 3.9e-34 148.7 86 75.6
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 5.1e-34 148.3 86 76.7
Cpa.g.sc19.46 Carica papaya HOM05D003369 ORTHO05D004089 6.7e-34 147.9 86 76.7
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 8.8e-34 147.5 86 74.4
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 8.8e-34 147.5 86 76.7
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 8.8e-34 147.5 86 76.7
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 8.8e-34 147.5 86 76.7
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 8.8e-34 147.5 86 77.9
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 1.1e-33 147.1 86 77.9
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 1.1e-33 147.1 86 76.7
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 1.1e-33 147.1 86 77.9
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.1e-33 147.1 86 76.7
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 1.1e-33 147.1 86 75.6
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 1.1e-33 147.1 86 76.7
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 1.5e-33 146.7 86 77.9
Psat0s4462g0120 Pisum sativum HOM05D003369 ORTHO05D004089 2.0e-33 146.4 86 75.6
Psat4g220880 Pisum sativum HOM05D003369 ORTHO05D004089 2.6e-33 146.0 86 75.6
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 3.3e-33 145.6 86 74.4
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 3.3e-33 145.6 86 74.4
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 3.3e-33 145.6 86 76.7
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 4.4e-33 145.2 86 73.3
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 4.4e-33 145.2 86 73.3
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 4.4e-33 145.2 86 75.6
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 4.4e-33 145.2 86 75.6
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 4.4e-33 145.2 86 76.7
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 5.7e-33 144.8 86 75.6
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 5.7e-33 144.8 86 74.4
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 5.7e-33 144.8 86 74.4
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 5.7e-33 144.8 86 74.4
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 5.7e-33 144.8 86 73.3
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 5.7e-33 144.8 86 75.6
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 7.4e-33 144.4 86 74.4
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 7.4e-33 144.4 86 74.4
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 7.4e-33 144.4 86 73.3
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 7.4e-33 144.4 86 75.6
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 7.4e-33 144.4 86 77.9
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 7.4e-33 144.4 86 74.4
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.3e-32 143.7 86 73.3
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 1.3e-32 143.7 86 75.6
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 1.3e-32 143.7 86 74.4
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.3e-32 143.7 86 73.3
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 1.7e-32 143.3 86 73.3
Duzib251G0615 Durio zibethinus HOM05D003369 ORTHO05D004089 1.7e-32 143.3 129 58.1
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 74.4
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 2.2e-32 142.9 86 73.3
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 2.8e-32 142.5 86 73.3
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 2.8e-32 142.5 86 74.4
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 2.8e-32 142.5 86 73.3
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 3.7e-32 142.1 86 73.3
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 3.7e-32 142.1 86 73.3
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 3.7e-32 142.1 86 75.6
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 3.7e-32 142.1 86 73.3
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 3.7e-32 142.1 87 74.7
MSTRG.8879 Avicennia marina HOM05D003369 ORTHO05D004089 4.8e-32 141.7 86 73.3
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 4.8e-32 141.7 86 73.3
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 4.8e-32 141.7 85 72.9
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 4.8e-32 141.7 86 72.1
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 6.3e-32 141.4 86 70.9
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 6.3e-32 141.4 86 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1623 Anthoceros agrestis HOM05D003369 ORTHO05D004089 8.2e-32 141.0 86 74.4
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 8.2e-32 141.0 86 73.3
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 8.2e-32 141.0 86 72.1
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 1.1e-31 140.6 86 74.4
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 70.9
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 72.1
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 72.1
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 72.1
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 72.1
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 72.1
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 72.1
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 74.4
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.4e-31 140.2 86 73.3
SHI28914 Sapria himalayana HOM05D003369 ORTHO05D004089 1.8e-31 139.8 86 72.1
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.4e-31 139.4 86 72.1
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.4e-31 139.4 86 72.1
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 2.4e-31 139.4 86 72.1
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 3.1e-31 139.0 86 70.9
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 3.1e-31 139.0 86 70.9
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 3.1e-31 139.0 86 70.9
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 4.1e-31 138.7 79 75.9
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 5.3e-31 138.3 86 70.9
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 5.3e-31 138.3 86 70.9
SEGI_31936 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 5.3e-31 138.3 79 75.9
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 5.3e-31 138.3 86 72.1
Lalb_Chr02g0149401 Lupinus albus HOM05D003369 ORTHO05D004089 1.2e-30 137.1 86 68.6
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 1.6e-30 136.7 86 68.6
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.0e-30 136.3 86 69.8
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 5.9e-30 134.8 86 72.1
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 7.7e-30 134.4 86 73.3
CBR_g49707 Chara braunii HOM05D003369 ORTHO05D004089 2.9e-29 132.5 86 69.8
SMO361G0532 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 3.8e-29 132.1 86 67.4
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 5.0e-29 131.7 86 68.6
SMO199G0006 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 3.6e-27 125.6 82 67.1
Mapoly0025s0052 Marchantia polymorpha HOM05D003369 ORTHO05D004089 1.5e-25 120.2 85 61.2
Cre13.g575300 Chlamydomonas reinhardtii HOM05D003369 ORTHO05D004089 1.1e-15 87.4 79 44.3
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 1.2e-14 84.0 45 84.4
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 2.0e-14 83.2 43 88.4
Glyma.10G170400 Glycine max HOM05D003369 ORTHO05D004089 2.7e-14 82.8 43 88.4
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.7e-14 82.8 43 86.0
Nitab4.5_0003473g0020 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.5e-14 82.4 53 75.5
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 3.5e-14 82.4 43 88.4
Haze_05900 Corylus avellana HOM05D003369 ORTHO05D004089 4.5e-14 82.0 43 88.4
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 4.5e-14 82.0 43 86.0
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 4.5e-14 82.0 43 86.0
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 5.9e-14 81.6 43 86.0
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 7.7e-14 81.3 43 83.7
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 1.0e-13 80.9 43 86.0
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 6.5e-13 78.2 55 74.5
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 8.5e-13 77.8 67 55.2
Medtr1g078330 Medicago truncatula HOM05D003369 ORTHO05D004089 1.1e-12 77.4 43 81.4
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 2.5e-12 76.3 55 67.3
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 2.5e-12 76.3 45 71.1
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 5.5e-12 75.1 43 76.7
MCO06G273 Micromonas commoda HOM05D003369 ORTHO05D004089 5.5e-12 75.1 87 41.4
Psat5g211480 Pisum sativum HOM05D003369 ORTHO05D004089 5.5e-12 75.1 45 77.8
PRCOL_00000010 Prasinoderma coloniale HOM05D003369 ORTHO05D004089 9.5e-12 74.3 90 41.1
DCAR_005879 Daucus carota HOM05D003369 ORTHO05D004089 2.7e-11 72.8 56 67.9
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 4.7e-11 72.0 44 77.3
TPR.G12571 Trifolium pratense HOM05D003369 ORTHO05D004089 1.8e-10 70.1 36 77.8
BolC4t21866H Brassica oleracea HOM05D003369 ORTHO05D004089 2.3e-10 69.7 61 57.4
C04p02180 Brassica napus HOM05D003369 ORTHO05D004089 4.0e-10 68.9 59 59.3
C04p02200 Brassica napus HOM05D003369 ORTHO05D004089 4.0e-10 68.9 59 59.3
BolC4t21865H Brassica oleracea HOM05D003369 ORTHO05D004089 1.2e-09 67.4 55 61.8
Lsat_1_v5_gn_4_100601 Lactuca sativa HOM05D004250 ORTHO05D005264 1.5e-09 67.0 42 76.2
Sabra12G0046000 Salix brachista HOM05D003369 ORTHO05D004089 2.4e-07 59.7 33 78.8


User provided reference genes

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