Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 6.6e-205 717.2 382 100.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 3.6e-155 552.0 380 82.4
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 5.8e-153 544.7 378 81.5
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.7e-152 543.1 385 79.2
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.0e-149 532.3 388 78.6
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.0e-141 507.3 386 74.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 6.7e-141 504.6 369 77.0
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-140 503.1 381 73.5
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.9e-140 503.1 343 80.8
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 4.3e-140 501.9 343 80.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 5.7e-140 501.5 325 82.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.7e-140 501.5 341 81.2
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.6e-139 500.0 383 74.9
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.7e-139 498.8 331 81.9
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.5e-137 491.9 371 76.3
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.5e-137 491.9 331 80.1
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 7.6e-137 491.1 383 73.1
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 7.6e-137 491.1 379 73.1
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.7e-136 490.0 386 73.3
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.5e-136 488.0 338 79.6
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-135 486.5 380 68.4
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.9e-135 486.5 342 77.8
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.9e-135 486.5 361 74.8
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.5e-135 486.1 346 77.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 9.3e-135 484.2 380 72.6
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.2e-134 483.8 380 70.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.7e-134 482.6 377 71.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.5e-134 482.3 381 73.2
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 4.6e-134 481.9 385 70.6
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.9e-134 481.1 380 72.4
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.3e-133 480.3 381 71.4
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.3e-133 480.3 381 70.3
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.3e-133 479.6 380 71.6
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 3.9e-133 478.8 380 72.1
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.9e-133 478.8 378 73.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 8.7e-133 477.6 381 69.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.9e-132 476.5 337 76.6
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.3e-132 475.7 378 72.2
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.3e-132 475.7 380 72.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 3.3e-132 475.7 379 71.5
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 7.4e-132 474.6 377 71.9
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 7.4e-132 474.6 385 70.4
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.7e-132 474.2 380 71.1
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.2e-131 473.0 384 70.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.7e-131 472.2 380 71.3
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 8.2e-131 471.1 380 71.6
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-130 470.7 377 71.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.4e-130 470.3 381 70.6
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.4e-130 470.3 387 67.7
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.4e-130 470.3 380 70.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.4e-130 469.5 351 75.8
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 5.3e-130 468.4 366 72.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 9.0e-130 467.6 381 68.2
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.5e-129 466.8 361 69.0
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.0e-129 466.5 330 76.1
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 3.4e-129 465.7 351 72.9
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.4e-129 465.7 361 68.7
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 3.4e-129 465.7 343 74.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 7.7e-129 464.5 379 68.9
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.3e-128 463.8 372 70.2
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.9e-128 462.6 350 72.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.8e-128 462.2 374 70.3
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 8.5e-128 461.1 381 69.6
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 377 69.0
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.4e-127 460.3 372 69.9
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.9e-127 459.9 381 69.3
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.9e-127 459.9 381 69.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-127 459.9 375 69.6
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.9e-127 459.9 361 71.2
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.2e-127 459.1 377 69.5
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 5.5e-127 458.4 372 69.6
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 7.2e-127 458.0 381 69.6
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.2e-127 458.0 377 69.2
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.2e-127 458.0 377 69.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 7.2e-127 458.0 377 69.2
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 9.4e-127 457.6 373 70.8
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 9.4e-127 457.6 377 69.0
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 9.4e-127 457.6 377 69.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.2e-126 457.2 363 71.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.2e-126 457.2 380 68.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.1e-126 456.4 348 73.3
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 2.7e-126 456.1 375 69.6
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-126 455.7 377 69.2
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-126 455.7 363 71.1
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 4.6e-126 455.3 348 71.6
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 7.9e-126 454.5 377 69.0
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 7.9e-126 454.5 377 69.0
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 7.9e-126 454.5 370 70.8
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-125 453.8 378 68.5
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.0e-125 452.6 382 68.1
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.9e-125 452.2 355 71.3
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.1e-125 451.8 378 68.3
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.1e-125 451.8 341 73.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 6.7e-125 451.4 380 68.9
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 8.8e-125 451.1 378 68.5
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.1e-124 450.7 379 68.1
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.3e-124 449.1 382 67.3
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 4.3e-124 448.7 381 67.7
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.8e-123 446.0 372 67.5
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.8e-123 446.0 355 69.6
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.7e-123 445.7 381 67.2
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 8.2e-123 444.5 372 66.9
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 5.3e-122 441.8 326 74.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 9.1e-122 441.0 330 72.7
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.5e-121 440.3 367 68.1
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.5e-121 440.3 338 72.8
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.4e-121 439.1 380 66.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 3.8e-120 435.6 349 70.2
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.6e-118 429.1 376 65.2
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.7e-115 419.1 381 63.8
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 3.1e-114 416.0 381 63.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.3e-114 415.2 381 63.0
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.2e-113 414.1 363 64.2
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.5e-113 412.5 334 69.5
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 7.7e-113 411.4 363 65.6
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 3.0e-109 399.4 381 64.0
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.8e-107 392.1 380 58.2
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 4.4e-100 369.0 320 67.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 8.3e-99 364.8 335 61.8
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.3e-99 364.8 328 63.4
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 9.1e-98 361.3 358 59.2
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 6.5e-96 355.1 305 67.9
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.1e-95 354.4 376 59.6
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 9.4e-95 351.3 248 78.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.3e-91 338.6 350 56.3
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 8.3e-91 338.2 245 77.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.1e-90 337.8 296 67.6
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.9e-88 329.7 352 55.4
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.0e-86 321.6 300 58.3
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 8.9e-85 318.2 324 55.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.2e-84 317.8 348 56.3
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 4.4e-84 315.8 207 76.3
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.5e-79 300.1 348 52.3
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.4e-76 289.3 334 55.1
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.6e-65 254.2 246 56.5
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.6e-65 254.2 212 67.0
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.7e-54 216.1 232 52.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.2e-51 207.2 129 82.2
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.4e-42 176.0 168 56.0
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.1e-37 161.8 154 58.4
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.6e-36 157.1 167 55.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-33 148.3 93 79.6
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.3e-32 144.8 104 69.2
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 6.9e-29 132.5 131 58.8
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 9.0e-29 132.1 97 69.1
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-25 121.7 78 79.5
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 7.9e-25 119.0 97 59.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.1e-21 108.6 114 52.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.4e-21 107.5 290 31.0
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 4.1e-21 106.7 93 61.3
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 5.3e-21 106.3 110 53.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-18 98.2 105 49.5
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-18 97.4 66 74.2
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 3.0e-16 90.5 76 61.8
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.9e-16 90.1 332 31.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 5.1e-16 89.7 189 37.0
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 4.1e-13 80.1 181 36.5
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.9e-12 76.3 59 64.4
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-09 68.6 48 70.8
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-09 67.8 48 68.8
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.6e-09 67.0 60 58.3
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.1e-09 66.2 43 69.8
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.8e-08 64.7 47 63.8
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 2.3e-08 64.3 124 33.1
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.1e-08 63.2 48 66.7
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 6.7e-08 62.8 43 69.8
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-07 61.6 48 62.5
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.0e-07 61.2 67 50.7
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.3e-06 58.5 67 70.1
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-06 57.8 48 60.4
TAR625G0182 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.2e-06 57.8 86 47.7
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 3.7e-06 57.0 66 48.5
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 8.2e-06 55.8 66 48.5


User provided reference genes

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