Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.6e-106 388.7 187 100.0
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.0e-78 297.0 161 91.3
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 4.1e-67 258.5 161 77.6
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 4.5e-66 255.0 161 77.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.9e-64 249.6 161 77.0
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 2.5e-64 249.2 161 76.4
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.6e-63 246.5 143 81.1
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.6e-63 246.5 161 73.3
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.4e-62 243.4 169 69.8
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 8.8e-62 240.7 159 74.2
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.3e-61 238.8 143 79.0
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.3e-61 238.8 143 79.0
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 4.8e-60 235.0 143 76.9
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.8e-59 233.0 161 71.4
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.1e-59 232.3 161 70.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 5.3e-59 231.5 143 76.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.3e-59 231.5 143 76.9
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.3e-59 231.5 143 76.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 7.0e-59 231.1 143 76.2
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.0e-58 229.6 143 76.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 2.6e-58 229.2 143 76.2
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.3e-57 226.9 140 72.9
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.8e-57 225.3 161 68.3
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 8.5e-57 224.2 143 76.2
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 8.5e-57 224.2 162 67.3
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.5e-56 223.4 143 72.0
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.5e-56 223.4 143 76.2
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.9e-56 223.0 140 72.9
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.5e-56 222.6 143 71.3
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 4.2e-56 221.9 161 66.5
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 4.2e-56 221.9 172 64.0
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 7.2e-56 221.1 162 67.3
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.2e-55 220.3 143 72.7
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.6e-55 219.9 161 67.1
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.1e-55 219.5 143 71.3
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 2.1e-55 219.5 161 67.1
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.7e-55 219.2 140 70.7
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.7e-55 219.2 143 72.7
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 8.0e-55 217.6 143 70.6
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.0e-54 217.2 143 69.2
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.4e-54 216.9 143 71.3
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 3.0e-54 215.7 143 68.5
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 3.0e-54 215.7 143 69.9
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 4.0e-54 215.3 157 65.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 5.2e-54 214.9 162 64.8
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 5.2e-54 214.9 161 63.4
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 6.8e-54 214.5 161 64.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 6.8e-54 214.5 154 65.6
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.2e-53 213.8 143 69.2
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.5e-53 213.4 143 71.3
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.0e-53 213.0 143 69.2
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.0e-53 213.0 143 70.6
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 9.8e-53 210.7 143 67.1
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.7e-52 209.9 143 67.8
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.2e-52 209.5 143 66.4
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 2.8e-52 209.1 143 69.2
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.8e-52 209.1 166 59.0
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.8e-52 209.1 161 62.7
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 2.8e-52 209.1 143 67.8
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.7e-52 208.8 143 68.5
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 3.7e-52 208.8 143 67.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.7e-52 208.8 161 63.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 4.8e-52 208.4 143 69.2
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 8.3e-52 207.6 143 68.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.4e-51 206.8 143 69.2
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.4e-51 206.8 142 67.6
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.8e-51 206.5 143 67.1
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 2.4e-51 206.1 143 68.5
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 4.1e-51 205.3 143 67.1
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 5.4e-51 204.9 145 66.9
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 5.4e-51 204.9 142 68.3
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 7.0e-51 204.5 143 66.4
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 9.1e-51 204.1 143 64.3
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.6e-50 203.4 171 59.6
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.6e-50 203.4 161 64.6
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.7e-50 202.6 143 66.4
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 4.5e-50 201.8 161 60.9
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.5e-50 201.8 142 68.3
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 2.2e-49 199.5 142 67.6
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 3.8e-49 198.7 162 61.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 5.0e-49 198.4 143 65.0
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 5.5e-48 194.9 142 66.2
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 9.4e-48 194.1 150 63.3
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 4.0e-46 188.7 143 60.8
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 2.0e-45 186.4 150 54.7
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 4.4e-45 185.3 131 67.2
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 5.7e-45 184.9 136 60.3
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.1e-43 180.6 156 59.0
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.4e-43 180.3 143 60.1
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.8e-43 179.9 161 55.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.5e-42 175.3 128 61.7
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 7.7e-42 174.5 142 54.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 7.7e-42 174.5 159 53.5
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.7e-41 173.3 138 60.9
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 6.6e-41 171.4 122 65.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 4.3e-40 168.7 143 56.6
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 4.3e-40 168.7 143 58.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 4.3e-40 168.7 143 56.6
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 7.2e-40 167.9 128 60.9
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.6e-39 166.8 143 56.6
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.6e-39 166.8 138 58.7
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 3.6e-39 165.6 128 60.9
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 6.1e-39 164.9 144 57.6
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 8.0e-39 164.5 143 60.1
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 5.2e-38 161.8 152 54.6
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 5.2e-38 161.8 152 54.6
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 5.2e-38 161.8 152 54.6
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 6.8e-38 161.4 142 54.9
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 2.0e-37 159.8 162 51.9
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.9e-32 143.3 118 60.2
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-29 134.0 140 47.9
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 9.8e-29 131.0 114 56.1
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.2e-20 103.2 90 52.2
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.2e-20 103.2 90 52.2
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 3.7e-20 102.4 87 56.3
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 7.1e-11 71.6 62 62.9


User provided reference genes

Program Settings