Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.6e-88 328.2 205 100.0
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 6.4e-82 307.8 206 94.7
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.9e-50 202.6 207 69.6
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.2e-45 186.4 199 63.8
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.8e-44 183.3 205 66.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.8e-44 183.3 120 78.3
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.3e-44 181.8 207 57.0
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 9.1e-44 181.0 207 60.4
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.5e-43 180.3 207 66.7
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.5e-43 180.3 208 65.4
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.5e-43 180.3 211 63.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.9e-43 178.3 207 61.8
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 9.4e-41 171.0 205 63.4
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.2e-40 170.6 209 61.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.7e-40 169.5 226 59.3
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 3.6e-40 169.1 203 59.6
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 3.6e-40 169.1 208 56.7
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.1e-38 164.1 208 63.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 2.6e-38 162.9 206 57.3
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.4e-38 162.2 207 61.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.7e-38 161.8 205 60.5
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.2e-37 159.8 208 59.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.8e-37 159.5 205 58.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 3.7e-37 159.1 207 52.7
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.8e-37 158.7 211 61.1
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 6.3e-37 158.3 205 56.1
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 8.2e-37 157.9 206 58.3
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.1e-36 157.5 207 60.4
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.4e-36 156.4 205 57.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 2.4e-36 156.4 139 62.6
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.1e-36 155.6 196 62.8
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.6e-35 152.9 207 56.0
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.6e-35 152.9 205 57.1
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.5e-35 152.5 209 54.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.5e-35 152.5 214 57.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 5.9e-35 151.8 205 49.3
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 5.9e-35 151.8 141 58.9
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 7.7e-35 151.4 205 55.1
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.0e-34 151.0 144 61.1
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.3e-34 150.6 206 62.6
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.2e-34 149.8 203 59.1
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 2.2e-34 149.8 209 53.1
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 2.9e-34 149.4 205 50.7
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 3.8e-34 149.1 145 59.3
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.8e-34 149.1 208 54.8
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 5.0e-34 148.7 227 52.0
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 5.0e-34 148.7 137 61.3
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 5.0e-34 148.7 209 48.8
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-34 148.3 205 49.8
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.5e-33 146.4 208 55.3
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.5e-33 146.4 137 61.3
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.5e-33 146.4 206 48.1
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.2e-33 145.6 201 51.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 4.2e-33 145.6 141 58.2
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.2e-33 145.6 234 51.7
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.5e-33 145.2 139 61.2
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.5e-33 145.2 141 57.4
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 7.2e-33 144.8 205 58.0
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 9.4e-33 144.4 205 51.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 9.4e-33 144.4 143 57.3
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 9.4e-33 144.4 206 51.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.2e-32 144.1 203 49.3
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.2e-32 144.1 205 54.6
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.2e-32 144.1 138 60.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.2e-32 144.1 184 54.9
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 4.7e-32 142.1 204 57.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 6.1e-32 141.7 134 61.9
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.1e-32 141.7 205 58.0
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 6.1e-32 141.7 205 57.6
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 8.0e-32 141.4 139 61.2
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 8.0e-32 141.4 207 50.2
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 8.0e-32 141.4 207 50.2
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.0e-31 141.0 133 61.7
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.4e-31 140.6 141 56.7
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.4e-31 140.6 135 60.7
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.3e-31 139.8 137 57.7
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.0e-31 139.4 203 56.2
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.2e-31 138.7 138 55.8
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 6.7e-31 138.3 205 56.1
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 8.8e-31 137.9 136 58.8
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.2e-30 137.5 207 50.7
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.5e-30 137.1 133 59.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.6e-30 136.3 206 50.0
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 7.5e-30 134.8 135 57.0
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 9.7e-30 134.4 137 59.1
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.3e-29 134.0 186 54.8
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.7e-29 133.7 202 47.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.2e-29 133.3 214 44.9
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.8e-29 132.9 138 55.1
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 8.2e-29 131.3 205 54.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.1e-28 131.0 205 55.1
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.8e-28 130.2 209 47.8
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.8e-28 130.2 211 54.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.4e-28 129.8 133 59.4
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 3.1e-28 129.4 187 54.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.0e-27 126.7 216 49.1
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.5e-27 125.9 97 69.1
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.5e-27 125.6 156 56.4
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 5.9e-27 125.2 222 43.2
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.7e-26 123.6 208 48.1
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.7e-26 123.6 84 76.2
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 3.8e-26 122.5 144 52.1
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 5.0e-26 122.1 209 41.6
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.9e-25 120.2 119 60.5
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 2.1e-24 116.7 134 54.5
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.6e-24 115.9 140 49.3
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.0e-23 114.4 135 53.3
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.3e-23 113.2 143 48.3
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 3.0e-23 112.8 138 49.3
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-22 110.9 84 70.2
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.4e-22 109.4 140 50.7
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.3e-21 107.5 147 63.9
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.7e-21 107.1 146 50.7
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 6.3e-21 105.1 186 42.5
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 8.3e-21 104.8 136 47.1
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 8.3e-21 104.8 136 47.1
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 8.3e-21 104.8 136 47.1
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 3.1e-20 102.8 122 52.5
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.1e-20 102.8 122 52.5
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.4e-20 102.1 72 70.8
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.4e-20 102.1 207 37.7
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 7.0e-20 101.7 144 45.8
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 7.0e-20 101.7 207 43.5
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 7.0e-20 101.7 207 43.5
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.2e-19 100.9 139 47.5
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.5e-19 99.4 122 50.8
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 3.5e-19 99.4 122 50.8
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.5e-19 99.4 122 50.8
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 7.7e-19 98.2 122 49.2
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.7e-19 98.2 137 63.5
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.7e-18 97.1 124 49.2
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 2.3e-18 96.7 207 42.0
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.9e-18 96.3 140 46.4
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 5.0e-18 95.5 124 48.4
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 5.0e-18 95.5 124 48.4
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 8.6e-18 94.7 60 80.0
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.5e-17 94.0 124 47.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 3.2e-17 92.8 140 42.1
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 7.2e-17 91.7 154 44.2
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.3e-15 86.7 63 69.8
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.0e-15 85.9 57 75.4
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 5.2e-15 85.5 73 64.4
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 5.2e-15 85.5 206 44.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.1e-12 77.8 65 64.6
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.1e-12 76.3 46 78.3
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.5e-11 72.8 127 41.7
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.9e-10 69.7 85 47.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.9e-10 69.7 53 66.0
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.9e-09 67.0 119 41.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 9.5e-09 64.7 124 48.4
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 4.7e-08 62.4 102 40.2


User provided reference genes

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