Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.3e-187 658.3 345 100.0
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.0e-136 489.6 265 98.5
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.2e-74 283.5 339 56.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.8e-73 280.4 343 58.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.3e-71 274.2 269 65.4
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 9.5e-70 268.1 348 56.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.1e-69 266.9 333 55.0
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 4.7e-69 265.8 344 54.9
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 5.2e-68 262.3 337 52.5
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 6.8e-68 261.9 320 55.0
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.5e-67 260.8 253 65.6
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.5e-67 260.8 343 52.5
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.9e-66 255.8 345 53.0
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.9e-65 253.8 349 51.0
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.4e-65 253.4 327 52.9
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.1e-65 252.7 348 53.4
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 5.4e-65 252.3 349 53.9
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 9.2e-65 251.5 326 55.2
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.0e-64 250.4 361 50.7
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.7e-64 250.0 338 53.0
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.6e-64 249.2 344 51.7
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.7e-63 247.3 344 53.5
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.7e-63 247.3 275 61.1
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 2.3e-63 246.9 343 52.2
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.3e-62 242.7 327 54.4
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 9.5e-62 241.5 344 51.2
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.6e-61 240.7 339 50.1
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 2.1e-61 240.4 283 60.4
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.8e-61 240.0 344 52.3
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.8e-61 240.0 344 52.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.8e-61 240.0 326 53.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 3.6e-61 239.6 347 51.3
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.6e-61 239.6 361 47.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 3.6e-61 239.6 360 48.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.7e-61 239.2 328 50.9
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.7e-61 239.2 345 50.1
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 8.1e-61 238.4 232 64.2
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.1e-60 238.0 370 46.5
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.8e-60 237.3 346 50.3
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-60 237.3 312 55.8
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 4.0e-60 236.1 343 51.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 5.2e-60 235.7 330 53.3
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.5e-59 234.2 336 53.0
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.5e-59 234.2 242 63.6
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.4e-59 233.0 328 51.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 7.5e-59 231.9 343 49.6
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 9.9e-59 231.5 328 49.7
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 9.9e-59 231.5 343 49.6
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.3e-58 231.1 349 49.0
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.7e-58 230.7 251 61.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 3.7e-58 229.6 338 51.5
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.7e-58 229.6 327 52.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.9e-58 229.2 270 60.4
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 8.3e-58 228.4 328 49.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 8.3e-58 228.4 343 49.0
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 8.3e-58 228.4 354 49.7
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 8.3e-58 228.4 339 49.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.9e-57 227.3 329 50.5
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.9e-57 227.3 270 60.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.2e-57 226.5 341 50.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 4.1e-57 226.1 341 49.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.6e-56 224.2 346 50.0
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 2.7e-56 223.4 311 53.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 2.7e-56 223.4 324 48.8
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 3.5e-56 223.0 279 56.3
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 6.0e-56 222.2 268 55.6
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 6.0e-56 222.2 338 47.3
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.0e-55 221.5 337 49.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.0e-55 221.5 340 48.8
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.3e-55 221.1 328 47.9
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.3e-55 220.3 322 51.6
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.9e-55 219.5 346 49.7
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 6.6e-55 218.8 342 47.1
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.5e-54 217.6 237 58.6
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 3.3e-54 216.5 332 47.0
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.3e-54 216.5 326 49.4
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.3e-54 216.1 291 56.0
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 9.5e-54 214.9 334 47.6
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 3.6e-53 213.0 294 52.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.2e-53 212.2 360 45.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 6.2e-53 212.2 340 48.5
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-52 211.5 331 50.2
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.1e-52 211.5 334 49.1
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.8e-52 210.7 350 49.7
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.1e-52 209.9 340 47.9
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 5.2e-52 209.1 320 49.7
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.2e-51 208.0 308 50.3
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.0e-51 207.2 324 48.5
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.6e-51 206.8 325 45.5
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.3e-50 204.5 324 47.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.2e-50 203.8 220 59.1
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.4e-50 202.2 322 48.8
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 6.4e-50 202.2 264 51.1
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 8.4e-50 201.8 320 46.6
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.2e-49 199.9 233 57.1
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.1e-49 199.5 269 53.5
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.2e-48 198.0 347 46.7
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.6e-48 197.6 320 48.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.6e-48 197.6 344 45.1
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 2.7e-48 196.8 347 45.5
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 4.6e-48 196.1 303 49.5
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.7e-47 194.1 323 41.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.7e-47 194.1 336 44.6
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 5.1e-47 192.6 323 41.5
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 6.6e-47 192.2 190 64.7
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 8.6e-47 191.8 338 45.3
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.5e-46 191.0 280 51.1
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 4.3e-46 189.5 288 50.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.6e-46 188.3 267 52.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 9.6e-46 188.3 279 50.5
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-46 188.3 286 49.7
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 9.6e-46 188.3 206 57.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 9.6e-46 188.3 361 43.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.6e-45 187.6 285 49.8
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 8.1e-45 185.3 285 49.5
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.1e-44 184.9 293 48.5
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.1e-44 184.9 368 42.4
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.4e-44 184.5 269 49.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 5.2e-44 182.6 293 48.5
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 5.2e-44 182.6 293 48.5
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 9.0e-44 181.8 287 49.1
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.5e-43 181.0 273 50.5
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 2.6e-43 180.3 283 49.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.6e-43 180.3 287 48.1
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.4e-43 179.5 374 43.0
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.3e-42 177.9 286 49.3
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.9e-42 176.8 203 55.7
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-42 176.0 279 48.0
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.9e-42 176.0 261 49.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.1e-41 174.9 264 49.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 5.4e-41 172.6 299 46.5
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 5.4e-41 172.6 299 46.5
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.6e-40 171.0 324 41.7
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.7e-40 170.2 279 48.4
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.5e-40 169.9 338 40.2
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.3e-39 167.2 250 46.4
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 3.9e-39 166.4 300 46.0
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 7.3e-38 162.2 304 44.7
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 9.6e-38 161.8 301 45.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.6e-37 159.8 288 44.1
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.4e-36 157.9 310 42.3
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 6.9e-36 155.6 247 48.6
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.6e-35 153.7 265 41.9
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.9e-34 150.2 323 38.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-32 144.8 205 51.2
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.1e-30 138.3 323 36.2
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-27 127.9 297 36.0
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 2.6e-27 127.1 329 35.9
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.4e-27 126.7 205 46.8
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 5.8e-27 125.9 215 44.2
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 5.8e-27 125.9 205 46.3
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 9.9e-27 125.2 102 72.5
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.2e-26 124.0 204 46.1
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.9e-26 123.6 204 46.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 3.8e-26 123.2 104 72.1
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 8.4e-26 122.1 183 47.5
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 3.3e-22 110.2 159 48.4
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 6.9e-20 102.4 275 33.8
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 4.5e-19 99.8 179 43.6
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 6.0e-16 89.4 164 41.5
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.7e-13 80.1 93 49.5
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 5.3e-12 76.3 66 75.8


User provided reference genes

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