Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.1e-99 365.9 214 100.0
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.5e-97 359.0 215 98.6
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 1.3e-45 187.2 196 61.2
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 8.0e-43 177.9 203 54.7
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.0e-42 177.6 241 51.5
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 5.2e-42 175.3 198 56.1
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.8e-42 174.9 200 56.5
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 6.8e-42 174.9 149 65.8
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 6.8e-42 174.9 149 65.1
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 8.9e-42 174.5 201 55.2
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.2e-41 174.1 202 54.5
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.2e-40 169.9 200 55.0
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.8e-39 166.8 235 51.9
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.8e-39 166.8 197 52.3
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 1.8e-39 166.8 203 52.2
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 4.1e-39 165.6 201 53.7
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 9.2e-39 164.5 186 54.3
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 7.8e-38 161.4 182 53.8
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.0e-37 161.0 197 54.8
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 8.6e-37 157.9 204 50.0
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 8.6e-37 157.9 199 49.7
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 3.3e-36 156.0 157 58.6
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 5.6e-36 155.2 198 55.1
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 8.0e-35 151.4 210 51.0
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 1.0e-34 151.0 154 56.5
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 4.0e-34 149.1 149 56.4
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 6.8e-34 148.3 157 54.1
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 1.2e-33 147.5 166 48.8
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 1.2e-33 147.5 166 48.8
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.0e-33 146.7 166 57.2
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.6e-33 146.4 150 60.0
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.6e-33 146.4 202 50.5
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 4.4e-33 145.6 179 48.0
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 5.8e-33 145.2 177 52.5
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.3e-32 144.1 151 58.9
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.7e-32 143.7 151 56.3
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.7e-32 143.7 151 56.3
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.7e-32 143.7 152 54.6
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 2.2e-32 143.3 161 53.4
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 2.4e-31 139.8 153 53.6
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.6e-30 137.1 194 49.0
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 1.7e-29 133.7 190 44.7
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.3e-29 133.3 162 51.9
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 1.5e-28 130.6 196 45.4
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 1.5e-28 130.6 140 59.3
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 2.5e-28 129.8 172 47.7
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 6.2e-27 125.2 158 48.7
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 3.1e-26 122.9 235 45.5
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 4.0e-26 122.5 207 43.0
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 4.4e-25 119.0 122 59.0
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 9.8e-25 117.9 153 52.9
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 2.2e-24 116.7 154 47.4
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.9e-23 113.6 195 41.0
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 3.2e-23 112.8 162 46.9
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 9.2e-23 111.3 186 42.5
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.7e-22 109.8 173 45.1
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.0e-21 106.3 166 39.2
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 7.3e-20 101.7 139 43.9
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 8.9e-18 94.7 140 45.7
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 8.9e-18 94.7 176 35.2
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 3.4e-17 92.8 130 39.2
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 9.9e-17 91.3 133 39.1
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.2e-16 90.1 187 33.7
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.4e-16 88.2 158 33.5
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 8.4e-16 88.2 139 37.4
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.1e-15 87.8 158 35.4
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-15 87.8 158 35.4
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.4e-15 87.4 151 36.4
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.4e-15 87.4 183 31.1
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.9e-15 87.0 171 35.1
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.9e-15 87.0 182 32.4
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 1.9e-15 87.0 109 57.8
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 2.4e-15 86.7 146 34.9
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 2.4e-15 86.7 155 31.6
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.2e-15 86.3 177 35.6
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 4.1e-15 85.9 179 31.8
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 4.1e-15 85.9 93 50.5
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 4.1e-15 85.9 133 35.3
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 5.4e-15 85.5 187 30.5
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 7.1e-15 85.1 158 34.8
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 7.1e-15 85.1 173 32.4
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 9.2e-15 84.7 148 34.5
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.2e-14 84.3 158 34.8
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.2e-14 84.3 204 29.4
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.6e-14 84.0 144 36.1
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.6e-14 84.0 153 33.3
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 1.6e-14 84.0 171 32.2
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.6e-14 84.0 164 34.1
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 2.1e-14 83.6 169 32.5
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.1e-14 83.6 196 31.6
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.5e-14 82.8 133 36.1
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.5e-14 82.8 171 31.6
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.6e-14 82.4 174 33.9
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 6.0e-14 82.0 158 34.2
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 6.0e-14 82.0 154 32.5
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 7.8e-14 81.6 133 32.3
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 1.0e-13 81.3 153 33.3
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.3e-13 80.9 148 33.1
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.3e-13 80.9 167 32.9
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.3e-13 80.9 158 34.2
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.7e-13 80.5 166 32.5
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-13 80.1 195 31.8
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-13 80.1 174 33.3
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 2.3e-13 80.1 159 32.1
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.3e-13 80.1 183 30.6
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 3.0e-13 79.7 192 30.2
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.0e-13 79.7 170 30.6
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 3.0e-13 79.7 184 31.5
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 3.9e-13 79.3 167 32.9
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 3.9e-13 79.3 165 30.9
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 5.1e-13 79.0 196 30.6
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 5.1e-13 79.0 176 30.7
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 5.1e-13 79.0 199 30.7
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.6e-13 78.6 179 29.1
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.6e-13 78.6 161 34.2
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 8.6e-13 78.2 180 31.1
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 8.6e-13 78.2 195 29.7
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.5e-12 77.4 161 33.5
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 1.5e-12 77.4 197 31.0
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 1.9e-12 77.0 167 31.7
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.9e-12 77.0 165 31.5
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.9e-12 77.0 172 37.2
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 2.5e-12 76.6 163 31.3
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.5e-12 76.6 178 32.0
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 3.3e-12 76.3 202 28.2
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 4.3e-12 75.9 148 31.8
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 7.3e-12 75.1 177 29.9
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 9.6e-12 74.7 165 33.3
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.2e-11 74.3 173 36.4
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.2e-11 74.3 194 29.4
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.6e-11 73.9 167 29.9
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.1e-11 73.6 165 28.5
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 2.1e-11 73.6 138 29.0
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.8e-11 73.2 157 29.3
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.6e-11 72.8 188 26.1
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 8.1e-11 71.6 134 35.1
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.1e-10 71.2 189 27.5
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.1e-10 71.2 151 29.1
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.4e-10 70.9 175 28.6
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.8e-10 70.5 133 33.8
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 3.1e-10 69.7 195 27.7
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 3.1e-10 69.7 177 28.8
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 5.2e-10 68.9 156 30.1
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 5.2e-10 68.9 145 34.5
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 6.9e-10 68.6 190 31.1
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 1.2e-09 67.8 183 30.1
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.5e-09 67.4 185 28.6
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 1.5e-09 67.4 165 27.3
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 2.0e-09 67.0 210 25.2
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 3.4e-09 66.2 135 29.6
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 4.4e-09 65.9 161 28.6
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.8e-09 65.5 132 29.5
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 7.6e-09 65.1 160 34.4
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 9.9e-09 64.7 173 27.2
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.9e-08 63.2 155 29.7
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 8.4e-08 61.6 143 30.8
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.1e-07 61.2 219 25.6
CDE12G0481 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.2e-07 59.7 131 29.8
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.2e-07 59.7 179 25.7
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 7.1e-07 58.5 150 30.7
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 7.1e-07 58.5 206 25.7
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 9.3e-07 58.2 207 27.5
PSO017G2423 Papaver somniferum HOM05D047741 ORTHO05D002891 1.2e-06 57.8 203 32.5
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.6e-06 57.4 133 31.6
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 2.1e-06 57.0 212 25.0
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.1e-06 57.0 178 28.7
PSO675G3707 Papaver somniferum HOM05D047741 ORTHO05D002891 2.7e-06 56.6 136 35.3
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.7e-06 56.6 181 28.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 3.5e-06 56.2 157 26.8
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 4.6e-06 55.8 203 27.1
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 4.6e-06 55.8 172 28.5
ECA232G3648 Erigeron canadensis HOM05D002704 ORTHO05D000131 6.0e-06 55.5 84 36.9
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 7.8e-06 55.1 166 31.9
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 7.8e-06 55.1 75 44.0


User provided reference genes

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