Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 0.0e+00 1411.4 762 100.0
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 2.3e-100 370.9 724 40.3
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 8.5e-71 272.7 533 38.6
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 1.0e-68 265.8 714 32.8
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 2.2e-66 258.1 723 33.2
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 5.2e-52 210.3 283 47.3
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 2.9e-42 177.9 600 32.2
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 5.4e-41 173.7 557 31.8
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 1.2e-40 172.6 830 27.5
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 2.1e-37 161.8 789 27.1
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.8e-37 161.4 792 27.0
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 2.3e-36 158.3 616 31.0
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.5e-35 155.6 271 41.3
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.0e-35 155.2 227 42.7
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 3.4e-35 154.5 793 27.6
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 2.2e-34 151.8 801 27.0
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 9.2e-33 146.4 796 27.3
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 1.2e-32 146.0 617 29.3
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 1.6e-32 145.6 592 29.6
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 3.9e-31 141.0 552 28.8
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 7.3e-30 136.7 566 29.5
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 1.2e-27 129.4 500 30.8
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 7.5e-27 126.7 119 56.3
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 2.2e-26 125.2 243 38.3
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 3.7e-26 124.4 115 58.3
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.9e-25 122.1 116 56.9
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 1.9e-25 122.1 735 26.4
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.7e-24 118.2 119 57.1
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 4.6e-24 117.5 138 47.8
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 6.0e-24 117.1 121 55.4
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 2.3e-23 115.2 572 27.4
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 3.9e-23 114.4 132 49.2
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 5.1e-23 114.0 441 28.6
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.1e-22 112.8 116 55.2
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 1.5e-22 112.5 421 29.5
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 1.5e-22 112.5 139 51.1
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 2.5e-22 111.7 139 51.1
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 3.6e-21 107.8 143 46.9
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 3.6e-21 107.8 415 29.9
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 1.4e-20 105.9 155 43.9
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 1.4e-20 105.9 130 46.9
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 5.2e-20 104.0 112 53.6
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 8.9e-20 103.2 717 24.4
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 1.2e-19 102.8 203 36.9
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 2.6e-19 101.7 126 48.4
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 2.6e-19 101.7 173 38.7
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 3.4e-19 101.3 173 38.2
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 4.4e-19 100.9 225 34.7
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 5.8e-19 100.5 338 29.9
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 5.8e-19 100.5 113 51.3
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 9.9e-19 99.8 116 49.1
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 3.8e-18 97.8 118 49.2
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 3.8e-18 97.8 137 43.8
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 4.9e-18 97.4 119 47.1
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 6.4e-18 97.1 135 43.0
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 2.4e-17 95.1 106 50.9
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 3.2e-17 94.7 209 34.4
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 4.2e-17 94.4 119 45.4
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 4.2e-17 94.4 143 46.2
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 5.4e-17 94.0 136 46.3
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 9.2e-17 93.2 340 28.5
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 1.6e-16 92.4 278 30.9
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 2.7e-16 91.7 122 41.0
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 4.6e-16 90.9 218 32.6
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.0e-15 89.7 122 43.4
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.0e-15 89.7 118 47.5
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 1.7e-15 89.0 119 42.9
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.7e-15 89.0 442 27.6
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 5.1e-15 87.4 124 46.8
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.7e-15 86.7 103 48.5
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.7e-15 86.7 218 31.7
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 1.1e-14 86.3 422 27.3
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 1.9e-14 85.5 482 26.1
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 2.5e-14 85.1 116 45.7
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 2.5e-14 85.1 201 35.3
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 3.3e-14 84.7 134 42.5
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 1.2e-13 82.8 184 34.8
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 2.8e-13 81.6 116 46.6
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 6.2e-13 80.5 117 43.6
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 6.2e-13 80.5 565 24.6
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 6.2e-13 80.5 233 30.9
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 1.8e-12 79.0 114 43.9
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 2.0e-11 75.5 114 39.5
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 2.0e-11 75.5 79 54.4
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 5.8e-11 73.9 470 24.3
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 6.0e-08 63.9 285 26.7
Nitab4.5_0000677g0220 Nicotiana tabacum HOM05D017238 ORTHO05D009536 7.8e-08 63.5 67 52.2
GSVIVG01033236001 Vitis vinifera HOM05D007911 ORTHO05D009536 4.3e-06 57.8 188 31.4


User provided reference genes

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