Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030059 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 1.3e-26 122.5 68 100.0
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 8.3e-10 66.6 71 62.0
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 8.3e-10 66.6 75 58.7
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 8.3e-10 66.6 75 58.7
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 8.3e-10 66.6 75 58.7
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.1e-09 66.2 71 60.6
Lsat_1_v5_gn_8_5961 Lactuca sativa HOM05D007755 ORTHO05D009866 1.4e-09 65.9 67 61.2
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 2.4e-09 65.1 71 60.6
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 1.6e-08 62.4 68 58.8
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 2.7e-08 61.6 85 54.1
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 2.7e-08 61.6 71 59.2
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 2.7e-08 61.6 71 59.2
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 7.7e-08 60.1 67 56.7
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.0e-07 59.7 63 61.9
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.9e-06 55.5 63 61.9
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.9e-06 55.5 63 61.9
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 1.9e-06 55.5 63 61.9
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.5e-06 55.1 63 60.3
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 3.3e-06 54.7 63 60.3
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.3e-06 54.7 63 60.3
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.3e-06 54.7 63 61.9
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 4.2e-06 54.3 63 58.7
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 4.2e-06 54.3 63 60.3
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-06 53.9 63 60.3
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 7.2e-06 53.5 63 60.3
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 58.7
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 9.5e-06 53.1 63 60.3


User provided reference genes

Program Settings