Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 6.0e-256 887.1 482 100.0
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.3e-252 874.0 480 99.2
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.9e-173 612.5 482 73.7
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 8.9e-167 590.9 482 72.6
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.5e-166 590.1 485 72.2
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 8.1e-160 567.8 482 70.1
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.2e-157 559.7 492 68.1
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 5.6e-153 545.0 589 59.1
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 5.3e-151 538.5 491 66.4
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.6e-150 536.2 487 68.4
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.7e-149 533.5 438 69.6
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.9e-148 530.0 488 66.0
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.2e-147 527.3 468 66.2
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.2e-147 527.3 468 64.1
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.6e-147 525.4 484 65.9
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.0e-146 524.2 483 66.3
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.9e-146 522.3 484 66.3
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 8.7e-146 521.2 492 64.0
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.3e-144 517.3 485 65.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.1e-144 516.5 492 63.6
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.8e-144 516.2 481 64.2
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 2.4e-143 513.1 494 63.2
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 3.1e-143 512.7 485 64.5
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 5.8e-142 508.4 487 63.4
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 5.5e-140 501.9 499 65.1
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 7.1e-140 501.5 480 64.6
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.7e-139 499.6 484 63.6
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 6.0e-139 498.4 485 63.3
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.0e-138 497.7 482 62.9
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.9e-138 495.7 480 63.8
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 5.1e-138 495.4 491 61.9
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.8e-136 488.8 367 77.7
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 4.0e-135 485.7 488 61.1
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 9.0e-135 484.6 466 63.9
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.0e-134 483.4 465 62.6
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.6e-134 483.0 491 60.9
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 5.8e-134 481.9 500 60.4
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.7e-133 480.3 486 63.0
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.5e-132 476.5 490 61.4
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-131 473.8 479 60.1
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.3e-130 470.7 496 61.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.8e-130 470.3 494 57.9
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.5e-129 467.2 426 66.2
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.4e-129 464.9 499 59.9
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.6e-128 463.8 480 60.8
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.6e-128 463.8 493 58.4
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.2e-128 463.4 499 59.7
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.8e-128 462.2 496 59.5
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-127 460.7 480 59.0
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.4e-127 459.9 480 59.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.4e-127 459.9 482 58.3
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 4.1e-127 459.1 583 54.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 5.3e-127 458.8 473 58.6
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.9e-127 458.4 480 58.8
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.6e-126 456.4 481 60.9
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.5e-126 455.7 481 60.9
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.3e-125 454.1 481 60.5
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 6.5e-125 451.8 482 57.3
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.1e-124 451.1 479 57.8
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 7.2e-124 448.4 482 58.1
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.2e-123 447.6 483 59.0
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.6e-123 446.0 502 59.4
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 6.1e-123 445.3 506 57.1
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 7.9e-123 444.9 485 57.5
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 7.9e-123 444.9 485 57.3
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.8e-122 441.4 479 56.8
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.3e-120 437.6 503 58.1
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 4.8e-120 435.6 483 56.7
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.8e-119 433.7 482 56.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.1e-119 432.6 450 58.7
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.6e-118 429.9 502 57.2
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 3.4e-118 429.5 485 56.3
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.7e-117 427.2 506 55.5
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.7e-117 427.2 475 56.6
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 5.0e-117 425.6 536 53.0
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.6e-115 420.6 489 55.6
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.6e-115 419.5 504 54.0
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 3.6e-115 419.5 480 54.2
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.0e-114 417.9 465 58.7
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 3.0e-114 416.4 480 56.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.0e-113 413.7 340 71.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 2.2e-112 410.2 469 55.7
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.8e-112 409.8 388 63.7
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 3.7e-112 409.5 479 57.6
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 3.7e-112 409.5 490 53.1
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 4.8e-112 409.1 528 51.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 6.3e-112 408.7 483 53.4
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.1e-111 407.9 520 52.5
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.1e-111 407.9 493 53.8
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 4.1e-111 406.0 481 55.7
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 9.1e-111 404.8 503 52.9
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.0e-110 403.7 432 57.2
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.6e-110 403.3 430 57.0
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.5e-108 396.7 487 52.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 9.4e-108 394.8 508 52.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.6e-107 392.9 457 53.4
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 2.3e-106 390.2 490 52.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 6.7e-106 388.7 486 54.7
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.8e-103 380.6 485 51.8
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 9.1e-103 378.3 509 50.9
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 9.1e-103 378.3 463 53.6
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.2e-101 373.6 474 53.4
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.9e-100 370.5 501 50.1
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.0e-98 364.8 560 47.3
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.8e-98 364.0 438 53.2
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 4.0e-98 362.8 495 50.1
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 7.0e-95 352.1 247 79.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-93 347.8 474 50.8
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 8.5e-93 345.1 478 50.0
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.1e-91 340.5 460 50.9
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 8.8e-90 335.1 472 48.5
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.4e-87 327.8 270 73.0
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.4e-87 327.8 357 59.7
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.5e-86 323.2 472 48.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 5.0e-85 319.3 453 47.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 5.2e-82 309.3 457 47.9
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.5e-81 307.8 385 50.6
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 8.3e-80 302.0 388 50.3
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 9.2e-79 298.5 472 45.6
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 9.2e-79 298.5 422 47.6
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 8.0e-75 285.4 419 47.7
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.0e-74 285.0 433 45.0
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 5.2e-74 282.7 293 61.4
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.3e-68 263.1 429 43.1
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 9.2e-63 245.4 490 39.2
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 3.5e-62 243.4 403 43.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.7e-54 217.2 265 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.9e-44 184.5 407 34.9
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.3e-44 182.6 465 32.5
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.8e-43 179.9 277 46.2
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 2.2e-32 144.4 412 30.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 8.4e-32 142.5 191 51.8
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.5e-28 131.7 112 62.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-26 124.0 300 39.7
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 9.0e-26 122.5 172 44.8
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.9e-24 117.5 100 64.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 4.9e-24 116.7 193 42.5
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.2e-23 114.0 67 79.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.1e-22 111.3 76 71.1
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.7e-22 110.9 459 27.0
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 6.7e-21 106.3 186 40.9
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.3e-20 103.6 298 31.2
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.6e-17 94.4 129 46.5
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 2.6e-17 94.4 182 36.8
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 4.5e-17 93.6 181 44.8
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 8.4e-16 89.4 195 37.4
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.6e-14 85.1 151 37.7
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 7.9e-14 82.8 273 33.3
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.0e-13 80.9 411 24.6
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 6.7e-13 79.7 314 29.3
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 7.4e-12 76.3 153 44.4
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.3e-11 75.5 195 33.8
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 2.4e-10 71.2 321 28.0
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 4.1e-10 70.5 85 54.1
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 6.9e-10 69.7 107 40.2
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 2.6e-09 67.8 310 27.1
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 6.5e-08 63.2 70 45.7
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 3.6e-06 57.4 100 44.0


User provided reference genes

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