Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.1e-161 572.4 304 100.0
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.3e-134 483.4 304 83.6
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.7e-131 473.0 304 82.2
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 7.2e-130 467.6 304 81.6
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.0e-128 463.8 304 79.6
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 7.4e-127 457.6 304 78.0
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 1.4e-125 453.4 304 78.6
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.8e-125 453.0 304 77.3
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 4.1e-125 451.8 300 78.7
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 9.1e-125 450.7 304 77.3
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.6e-124 449.1 304 76.0
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.5e-124 448.4 304 76.0
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 5.0e-123 444.9 304 78.3
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 5.0e-123 444.9 296 78.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.0e-123 444.9 304 77.6
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 6.5e-123 444.5 304 75.0
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 6.5e-123 444.5 304 75.0
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.5e-123 444.5 304 75.0
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.1e-122 443.7 304 75.3
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.5e-122 443.4 304 77.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.5e-122 443.4 304 77.3
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.5e-122 442.6 296 77.7
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 7.2e-122 441.0 304 76.0
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 76.6
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 76.6
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 75.7
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.7e-121 439.1 295 77.6
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.6e-121 438.7 304 76.0
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.6e-121 438.7 304 74.3
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 4.7e-121 438.3 303 76.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 4.7e-121 438.3 303 76.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 4.7e-121 438.3 304 75.7
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.0e-120 437.2 304 78.6
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.4e-120 436.8 298 76.2
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 3.0e-120 435.6 304 75.3
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 3.0e-120 435.6 295 79.7
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.0e-120 435.3 304 74.7
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 5.2e-120 434.9 304 74.3
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 6.8e-120 434.5 292 77.7
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 8.8e-120 434.1 294 79.3
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 8.8e-120 434.1 297 76.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.2e-119 433.7 300 75.3
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.2e-119 433.7 297 76.8
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.5e-119 433.3 281 81.5
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.5e-119 433.3 292 77.7
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.6e-119 432.6 304 75.7
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.6e-119 432.6 295 76.6
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 3.4e-119 432.2 304 76.6
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.4e-119 432.2 304 74.3
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.7e-118 429.9 295 77.3
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 2.8e-118 429.1 295 76.3
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.4e-117 426.8 304 74.7
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 4.1e-117 425.2 295 77.3
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 1.2e-116 423.7 297 75.4
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.6e-116 423.3 290 76.2
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 5.9e-116 421.4 305 74.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 5.9e-116 421.4 299 73.6
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 7.7e-116 421.0 304 74.3
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 7.7e-116 421.0 295 75.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.0e-115 420.6 281 78.3
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.2e-115 419.5 304 74.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.9e-115 419.1 305 72.8
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.8e-115 418.7 304 72.7
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 8.5e-115 417.5 304 73.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 8.5e-115 417.5 305 73.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.9e-114 416.4 305 73.4
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.9e-114 416.4 304 72.7
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 2.5e-114 416.0 305 72.5
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 4.2e-114 415.2 293 75.1
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 5.5e-114 414.8 305 73.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.2e-113 413.7 304 72.7
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.1e-113 412.9 305 73.1
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-112 410.2 304 72.7
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.8e-112 409.8 304 71.4
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.3e-112 409.5 298 72.1
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 3.0e-112 409.1 293 73.4
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 5.2e-112 408.3 308 71.1
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 8.8e-112 407.5 310 70.6
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 8.8e-112 407.5 293 74.1
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 8.8e-112 407.5 293 73.4
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.2e-111 407.1 309 70.6
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.6e-111 406.0 298 73.5
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 9.8e-111 404.1 300 71.3
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.3e-110 403.7 291 74.9
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 70.1
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.2e-110 402.9 304 70.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 4.8e-110 401.7 300 72.0
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.1e-109 400.6 304 69.4
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.8e-109 399.8 295 71.5
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 3.1e-109 399.1 308 68.8
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 3.5e-108 395.6 306 69.3
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 4.5e-108 395.2 305 70.5
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.0e-107 394.0 305 70.2
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.3e-107 393.7 296 70.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.1e-106 390.6 304 69.4
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.5e-106 390.2 305 69.5
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.1e-105 384.8 297 69.4
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-103 380.6 281 73.3
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 2.9e-99 365.9 273 73.3
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.9e-99 365.9 302 62.9
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.6e-99 364.4 281 70.8
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.6e-97 359.0 297 66.0
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.7e-97 358.6 304 63.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.8e-96 356.7 281 68.7
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 4.4e-95 352.1 305 60.7
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 9.5e-82 307.8 285 59.6
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 5.8e-79 298.5 229 70.7
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 2.4e-77 293.1 306 52.9
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.7e-76 289.7 195 77.4
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 4.7e-73 278.9 295 55.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.8e-70 269.2 206 71.4
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.5e-66 256.5 295 50.8
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.7e-62 243.8 291 49.1
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 2.2e-62 243.4 195 69.2
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.2e-60 237.7 159 76.7
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 7.9e-60 235.0 163 73.6
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.1e-58 231.1 205 60.0
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 3.8e-54 216.1 336 42.9
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 3.2e-53 213.0 139 78.4
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.0e-52 208.8 298 45.6
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.3e-49 201.1 142 74.6
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.0e-47 193.7 240 52.1
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 6.7e-43 178.7 211 50.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.4e-40 170.2 289 42.9
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 3.2e-37 159.8 115 75.7
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 4.2e-37 159.5 186 51.6
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 3.0e-35 153.3 111 73.0
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 6.7e-35 152.1 209 44.0
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.4e-32 143.7 98 71.4
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.7e-27 125.6 97 70.1
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 5.0e-22 109.4 295 31.5
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 6.5e-22 109.0 86 62.8
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.1e-16 91.7 85 63.5
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.1e-16 91.7 303 28.1
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 9.1e-16 88.6 60 70.0
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.6e-15 87.8 172 36.0
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.3e-14 84.7 82 52.4
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 5.5e-13 79.3 45 80.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.5e-10 71.2 150 35.3
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 7.7e-07 58.9 57 56.1


User provided reference genes

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