Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.1e-172 608.6 591 100.0
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.7e-151 540.4 591 94.8
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.1e-150 537.7 591 94.6
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 8.4e-143 511.5 591 90.9
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 6.1e-109 399.1 428 89.3
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 2.3e-108 397.1 592 82.4
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 6.8e-108 395.6 593 82.6
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 8.8e-100 368.6 591 59.2
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.2e-99 368.2 455 80.7
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.8e-97 360.9 454 80.0
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 3.5e-96 356.7 453 80.1
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 5.2e-92 342.8 455 78.7
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.5e-91 341.3 588 79.8
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 2.6e-91 340.5 455 77.1
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.4e-89 334.7 451 78.0
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 3.3e-86 323.6 449 52.8
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 9.5e-86 322.0 593 77.2
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 1.2e-85 321.6 453 75.5
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 2.1e-85 320.9 456 74.6
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 6.2e-85 319.3 459 57.7
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 1.8e-84 317.8 453 74.8
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 5.2e-84 316.2 456 60.3
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 8.9e-84 315.5 457 60.0
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 7.5e-83 312.4 456 75.0
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 1.7e-82 311.2 424 75.7
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 2.2e-82 310.8 450 76.0
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 8.3e-82 308.9 426 79.6
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 7.0e-81 305.8 456 73.2
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 9.2e-81 305.4 456 74.8
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.2e-80 305.1 426 79.6
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 1.6e-80 304.7 454 74.0
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 1.7e-79 301.2 429 75.5
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 6.6e-79 299.3 454 75.3
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 6.6e-79 299.3 457 73.7
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 1.1e-78 298.5 456 74.1
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 1.9e-78 297.7 456 73.7
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 2.5e-78 297.4 466 68.7
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.5e-78 297.4 466 70.0
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 2.5e-78 297.4 425 78.6
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 2.5e-78 297.4 455 49.7
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 4.3e-78 296.6 456 74.1
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 7.3e-78 295.8 474 68.8
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 1.1e-76 292.0 454 71.4
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 4.0e-76 290.0 424 76.2
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.0e-76 290.0 424 76.2
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 4.0e-76 290.0 424 75.2
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.2e-76 289.7 424 75.9
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 6.8e-76 289.3 456 73.0
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 6.8e-76 289.3 459 63.4
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 1.2e-75 288.5 452 73.9
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 2.0e-75 287.7 454 71.6
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 2.6e-75 287.3 409 78.0
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 4.4e-75 286.6 454 72.2
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 5.8e-75 286.2 467 70.9
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.2e-74 284.3 424 74.8
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.4e-73 281.6 427 66.7
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 1.4e-73 281.6 474 69.4
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 5.4e-73 279.6 458 72.5
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 7.1e-73 279.3 466 43.3
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 1.2e-72 278.5 428 52.6
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.6e-72 278.1 423 77.1
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 2.7e-72 277.3 441 74.1
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 2.7e-72 277.3 200 67.0
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 2.7e-72 277.3 475 67.8
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 3.5e-72 276.9 427 52.9
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 3.5e-72 276.9 427 54.1
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 4.6e-72 276.6 423 77.3
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 1.0e-71 275.4 454 72.9
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.3e-71 275.0 423 77.8
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 2.3e-71 274.2 429 58.0
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 3.9e-71 273.5 424 76.2
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.9e-70 271.2 200 66.0
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 3.1e-68 263.8 424 76.2
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 4.0e-68 263.5 459 53.4
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 6.8e-68 262.7 457 57.8
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 6.8e-68 262.7 457 41.4
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 2.6e-67 260.8 429 73.7
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.4e-67 260.4 473 67.7
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.7e-66 258.1 430 49.1
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.1e-65 255.4 428 73.4
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 7.3e-62 242.7 221 58.8
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 1.2e-61 241.9 459 41.8
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 3.1e-60 237.3 457 57.3
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 4.0e-60 236.9 424 73.8
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 6.9e-60 236.1 216 56.5
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 2.6e-59 234.2 170 70.0
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 7.6e-59 232.6 173 64.7
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 4.2e-57 226.9 337 61.7
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 4.2e-57 226.9 423 72.3
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.2e-56 225.3 457 55.1
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 2.1e-56 224.6 432 48.4
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 6.6e-55 219.5 424 71.0
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 8.7e-55 219.2 202 56.4
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 8.7e-55 219.2 202 56.4
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.3e-54 216.1 170 61.2
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 2.8e-53 214.2 170 62.4
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 5.8e-51 206.5 201 53.2
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 1.7e-50 204.9 216 47.7
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 4.9e-50 203.4 202 51.5
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 8.4e-50 202.6 124 79.8
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-46 191.8 126 73.8
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.6e-45 188.3 161 59.6
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 1.7e-42 178.3 198 44.4
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.4e-41 174.5 423 68.1
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 4.2e-41 173.7 317 85.5
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 7.1e-41 172.9 172 51.7
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 9.3e-33 146.0 113 64.6
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 1.2e-32 145.6 308 80.8
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 6.7e-31 139.8 92 72.8
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 8.7e-31 139.4 143 55.2
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 9.6e-30 136.0 80 77.5
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 4.1e-28 130.6 90 67.8
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 2.6e-27 127.9 96 63.5
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 5.7e-22 110.2 100 56.0
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 3.1e-20 104.4 60 81.7
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 1.4e-15 89.0 62 69.4
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 3.3e-14 84.3 69 56.5
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 4.8e-13 80.5 47 83.0
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 3.8e-10 70.9 116 37.1
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 2.5e-09 68.2 39 82.1
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 7.2e-09 66.6 224 25.9
BcaC01g01238 Brassica carinata HOM05D006232 ORTHO05D007746 7.4e-06 56.6 48 52.1


User provided reference genes

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