Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.7e-170 602.1 335 100.0
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.7e-169 599.4 335 99.4
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.3e-100 369.8 362 68.5
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 3.6e-90 335.9 339 64.3
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 4.4e-88 328.9 393 54.7
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 2.0e-85 320.1 374 61.0
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.6e-74 283.9 360 58.6
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.2e-56 224.6 347 46.7
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 6.0e-53 212.2 323 51.1
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 3.0e-52 209.9 350 45.1
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 4.8e-50 202.6 356 41.6
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.2e-48 198.0 238 51.3
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 3.4e-48 196.4 336 43.2
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 3.4e-48 196.4 281 50.2
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 7.1e-46 188.7 348 42.5
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 1.2e-45 188.0 359 40.1
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 8.7e-44 181.8 368 41.3
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 8.7e-44 181.8 352 39.8
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 1.9e-43 180.6 358 39.1
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 2.5e-43 180.3 352 38.4
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.3e-43 179.5 353 39.9
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 9.6e-43 178.3 360 39.4
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 1.3e-42 177.9 380 37.4
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.8e-42 176.8 352 39.2
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 3.4e-40 169.9 385 35.1
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 5.8e-40 169.1 351 37.6
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 7.6e-40 168.7 357 38.7
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 7.6e-40 168.7 316 44.6
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 2.2e-39 167.2 341 36.1
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 3.8e-39 166.4 333 34.8
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 3.8e-39 166.4 344 36.3
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.9e-38 164.1 190 51.6
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 9.3e-38 161.8 347 39.5
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 3.5e-37 159.8 274 39.8
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 6.0e-37 159.1 274 42.0
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 1.8e-36 157.5 351 39.6
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 3.0e-36 156.8 274 40.5
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.1e-36 156.0 272 41.5
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.5e-35 154.5 278 41.4
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.6e-34 151.0 312 36.5
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.6e-34 151.0 300 36.7
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 2.8e-34 150.2 304 37.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.8e-34 150.2 219 47.0
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 2.8e-34 150.2 337 36.8
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.1e-33 148.3 305 39.7
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.3e-33 146.0 319 35.7
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 6.9e-33 145.6 320 34.7
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 1.2e-32 144.8 426 34.7
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 2.2e-31 140.6 239 42.7
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 2.9e-31 140.2 365 34.2
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 2.5e-30 137.1 344 35.8
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 7.1e-30 135.6 214 41.6
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 1.2e-29 134.8 311 36.3
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 6.0e-29 132.5 350 34.0
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 7.9e-29 132.1 304 45.4
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.8e-28 131.0 300 37.0
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 2.5e-27 127.1 365 34.0
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 4.8e-26 122.9 340 33.8
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.1e-25 121.7 276 41.3
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 4.1e-25 119.8 268 38.4
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 6.9e-25 119.0 291 34.0
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 4.5e-24 116.3 346 32.7
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.1e-22 111.7 321 34.3
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 5.5e-22 109.4 263 35.4
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 3.6e-21 106.7 212 36.3
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 4.6e-21 106.3 255 40.0
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 1.9e-19 100.9 337 31.5
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 1.3e-18 98.2 277 33.9
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.7e-18 97.8 157 43.9
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 6.3e-18 95.9 276 33.7
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 8.2e-18 95.5 285 33.3
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 1.4e-17 94.7 303 33.0
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.4e-16 90.1 278 33.8
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.0e-15 88.6 149 38.3
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.1e-14 85.1 60 68.3
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 4.2e-14 83.2 113 46.9
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 5.1e-12 76.3 82 52.4
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 7.4e-11 72.4 177 36.7
PGR142G3672 Punica granatum HOM05D007421 ORTHO05D009203 9.7e-11 72.0 226 31.4
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 3.7e-10 70.1 72 48.6
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 3.7e-10 70.1 72 48.6
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 8.2e-10 68.9 86 47.7
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.8e-09 67.8 78 50.0
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 7.0e-09 65.9 87 47.1
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.2e-08 65.1 140 38.6
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 3.4e-08 63.5 35 71.4
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 4.5e-08 63.2 137 35.8
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 4.5e-08 63.2 137 35.8
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 4.5e-08 63.2 148 32.4
Lalb_Chr12g0208501 Lupinus albus HOM05D007421 ORTHO05D009203 7.7e-08 62.4 194 33.5
Prupe.3G149200 Prunus persica HOM05D002710 ORTHO05D002905 7.7e-08 62.4 210 27.1
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 7.7e-08 62.4 83 42.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.7e-08 62.4 38 63.2
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 7.7e-08 62.4 38 63.2
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 2.9e-07 60.5 38 60.5
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 6.5e-07 59.3 34 67.6
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 8.5e-07 58.9 88 44.3
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.1e-06 58.5 32 65.6
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 3.2e-06 57.0 116 33.6
Ca_02335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 9.4e-06 55.5 54 48.1


User provided reference genes

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