Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029998 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-121 439.5 239 100.0
CSS0022576 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.7e-86 323.2 254 76.4
CSS0013518 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-83 313.2 247 76.5
CSS0018351 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.0e-83 312.4 249 75.9
CSS0037492 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.0e-83 312.0 256 73.4
CSS0028764 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.3e-61 239.2 137 84.7
Rhsim01G0079300 Rhododendron simsii HOM05D005012 ORTHO05D005886 2.6e-34 149.8 137 48.9
Rhsim01G0158900 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.6e-34 148.3 137 48.2
Rhsim01G0079900 Rhododendron simsii HOM05D005012 ORTHO05D005886 9.9e-34 147.9 137 48.2
CSS0018539 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.4e-32 143.3 135 47.4
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.4e-32 143.3 135 47.4
CSS0019574 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-32 142.5 135 48.1
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-32 142.5 135 48.1
CSS0000891 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0001231 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0003542 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0022677 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 47.4
CSS0027060 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0028601 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0033025 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0033950 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0041327 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0041437 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.9
CSS0042015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-32 142.1 135 48.1
CSS0005185 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.3e-32 141.4 135 48.1
CSS0008214 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.3e-32 141.4 137 47.4
CSS0040160 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.3e-32 141.4 135 48.1
CSS0046119 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.3e-32 141.4 137 47.4
CSS0013618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-31 140.6 135 47.4
CSS0001339 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-31 139.8 137 46.7
CSS0007522 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-31 139.8 136 46.3
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-31 139.8 135 47.4
CSS0038015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-31 139.8 135 48.1
FvH4_4g09832 Fragaria vesca HOM05D005012 ORTHO05D005886 4.6e-31 139.0 141 47.5
Rhsim07G0167600 Rhododendron simsii HOM05D005012 ORTHO05D005886 7.9e-31 138.3 137 46.0
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 7.9e-31 138.3 135 46.7
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.9e-30 136.0 141 46.8
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.9e-30 136.0 141 46.8
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 2.8e-28 129.8 135 47.4
FAN15G1881 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.8e-26 122.1 123 45.5
FAN04G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.8e-25 119.4 121 45.5
FAN12G0378 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.1e-24 117.9 141 43.3
FAN16G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 9.3e-24 114.8 141 42.6
RcHm_v2.0_Chr1g0341871 Rosa chinensis HOM05D005012 ORTHO05D005886 4.6e-23 112.5 113 44.2
Rhsim05G0024300 Rhododendron simsii HOM05D005012 ORTHO05D005886 6.0e-23 112.1 108 43.5
Rhsim05G0034600 Rhododendron simsii HOM05D005012 ORTHO05D005886 6.0e-23 112.1 108 43.5
FAN20G1519 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.3e-22 110.9 141 40.4
FvH4_1g28181 Fragaria vesca HOM05D005012 ORTHO05D005886 3.0e-22 109.8 115 45.2
FAN17G1574 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.0e-22 109.8 132 41.7
Rhsim07G0133200 Rhododendron simsii HOM05D005012 ORTHO05D005886 6.7e-22 108.6 137 43.1
vmacro22380 Vaccinium macrocarpon HOM05D005012 ORTHO05D005886 6.7e-22 108.6 137 43.1
FAN11G2763 Fragaria x ananassa HOM05D005012 ORTHO05D008319 1.1e-21 107.8 115 41.7
CSS0035704 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.9e-21 107.1 135 41.5
FvH4_6g37930 Fragaria vesca HOM05D005012 ORTHO05D005886 3.3e-21 106.3 115 41.7
CSS0007280 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.4e-21 105.1 135 40.7
CSS0040728 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.6e-21 104.8 135 40.7
Rhsim09G0006300 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.3e-20 104.4 144 39.6
CSS0030618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.8e-20 102.4 135 40.7
FAN28G1702 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-19 100.9 115 42.6
Rhsim05G0112900 Rhododendron simsii HOM05D005012 ORTHO05D005886 6.9e-19 98.6 102 45.1
FAN22G1849 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.5e-18 97.4 99 46.5
CSS0037011 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.6e-18 96.7 96 44.8
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.8e-17 92.8 95 46.3
FAN26G2139 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.8e-17 92.8 95 46.3
FAN13G1160 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.9e-17 92.4 97 45.4
FvH4_1g28940 Fragaria vesca HOM05D005012 ORTHO05D005886 8.4e-17 91.7 97 44.3
FAN15G1928 Fragaria x ananassa HOM05D005012 ORTHO05D005886 8.4e-17 91.7 95 46.3
FAN04G2305 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-16 90.9 102 44.1
FAN04G2098 Fragaria x ananassa HOM05D005012 ORTHO05D005886 9.3e-16 88.2 95 44.2
FAN07G2178 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.2e-15 87.8 95 44.2
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 6.0e-15 85.5 131 32.8
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 6.0e-15 85.5 131 32.8
Prupe.1G266100 Prunus persica HOM05D005012 ORTHO05D000385 3.9e-14 82.8 144 29.9
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 3.9e-14 82.8 144 29.9
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.1e-14 82.4 130 34.6
RcHm_v2.0_Chr1g0322131 Rosa chinensis HOM05D005012 ORTHO05D005886 5.1e-14 82.4 116 33.6
CSS0010423 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.7e-13 78.2 135 35.6
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 1.6e-12 77.4 151 31.1
Rhsim01G0081500 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.6e-12 77.4 122 36.1
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.8e-12 76.6 135 31.1
CSS0016088 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.8e-12 75.9 135 34.1
FAN16G2301 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.8e-12 75.9 105 41.0
FAN19G1173 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.3e-12 75.5 73 47.9
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 6.3e-12 75.5 137 32.8
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 6.3e-12 75.5 135 30.4
FvH4_3g22860 Fragaria vesca HOM05D005012 ORTHO05D005886 1.1e-11 74.7 135 30.4
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 1.8e-11 73.9 144 31.2
CSS0009064 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-11 73.9 96 39.6
FAN17G1975 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.1e-11 73.2 88 34.1
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 6.9e-11 72.0 136 30.1
TWI77G0909 Tripterygium wilfordii HOM05D005012 ORTHO05D005886 1.2e-10 71.2 75 44.0
RcHm_v2.0_Chr7g0222641 Rosa chinensis HOM05D005012 ORTHO05D005886 5.9e-10 68.9 141 31.2
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 1.0e-09 68.2 139 28.1
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 1.3e-09 67.8 135 28.9
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.3e-09 67.8 135 28.9
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 2.2e-09 67.0 126 27.8
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 2.2e-09 67.0 135 27.4
vmacro14094 Vaccinium macrocarpon HOM05D000012 ORTHO05D000978 2.9e-09 66.6 82 43.9
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 3.8e-09 66.2 135 28.1
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 5.0e-09 65.9 132 29.5
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 6.5e-09 65.5 135 28.9
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 6.5e-09 65.5 135 27.4
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 6.5e-09 65.5 135 28.9
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.5e-09 65.5 138 27.5
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 8.5e-09 65.1 135 27.4
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.4e-08 64.3 134 29.1
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.2e-08 62.0 135 29.6
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.4e-08 61.6 135 29.6
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 9.4e-08 61.6 135 28.1
arahy.Tifrunner.gnm1.ann1.U7U33W Arachis hypogaea HOM05D010482 ORTHO05D000385 1.2e-07 61.2 139 29.5
CSS0044513 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.6e-07 60.8 132 27.3
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.6e-07 60.8 135 27.4
Cc00_g05340 Coffea canephora HOM05D005012 ORTHO05D005886 2.1e-07 60.5 110 28.2
CSS0044099 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 2.7e-07 60.1 132 28.0
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 2.7e-07 60.1 120 26.7
FAN26G2799 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.7e-07 60.1 66 43.9
EL10Ac9g21493 Beta vulgaris HOM05D001385 ORTHO05D004434 3.6e-07 59.7 136 25.7
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.6e-07 59.7 103 29.1
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-07 59.7 132 28.0
Rhsim11G0067500 Rhododendron simsii HOM05D010774 ORTHO05D013539 3.6e-07 59.7 135 25.9
CANSAT11G0213 Cannabis sativa HOM05D001309 ORTHO05D000385 4.6e-07 59.3 139 25.9
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.1e-07 58.9 148 25.0
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.0e-06 58.2 135 28.1
Hund06374 Selenicereus undatus HOM05D001385 ORTHO05D004434 1.4e-06 57.8 129 27.1
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 1.8e-06 57.4 88 29.5
CSS0024121 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.8e-06 57.4 132 28.0
CSS0038787 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.8e-06 57.4 132 28.0
CSS0037564 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 2.3e-06 57.0 129 27.9
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.0e-06 56.6 135 26.7
CSS0005612 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 3.9e-06 56.2 132 25.8
CANSAT21G2150 Cannabis sativa HOM05D001309 ORTHO05D000385 3.9e-06 56.2 139 25.9
RcHm_v2.0_Chr6g0306081 Rosa chinensis HOM05D005012 ORTHO05D005886 8.8e-06 55.1 50 48.0


User provided reference genes

Program Settings