Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029960 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 6.5e-48 193.7 98 100.0
CSS0010586 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 6.1e-30 134.0 120 64.2
CSS0012428 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 4.7e-22 107.8 62 87.1
CSS0031987 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 4.7e-22 107.8 62 87.1
Rhsim08G0125500 Rhododendron simsii HOM05D001602 ORTHO05D001470 4.0e-21 104.8 64 81.2
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 8.8e-21 103.6 67 76.1
Actinidia34680 Actinidia chinensis HOM05D001602 ORTHO05D001470 1.5e-20 102.8 62 80.6
Ciclev10024563m.g Citrus clementina HOM05D001602 ORTHO05D001470 1.5e-20 102.8 67 74.6
TPR.G31348 Trifolium pratense HOM05D001602 ORTHO05D001470 1.5e-20 102.8 67 74.6
arahy.Tifrunner.gnm1.ann1.W1MG13 Arachis hypogaea HOM05D001602 ORTHO05D001470 2.0e-20 102.4 67 74.6
Duzib248G1501 Durio zibethinus HOM05D001602 ORTHO05D001470 2.0e-20 102.4 67 73.1
arahy.Tifrunner.gnm1.ann1.IXI1D4 Arachis hypogaea HOM05D001602 ORTHO05D001470 2.6e-20 102.1 67 73.1
vmacro17753 Vaccinium macrocarpon HOM05D001602 ORTHO05D001470 2.6e-20 102.1 62 80.6
Sabra17G0126100 Salix brachista HOM05D001602 ORTHO05D001470 3.3e-20 101.7 67 76.1
Thecc.01G143100 Theobroma cacao HOM05D001602 ORTHO05D001470 3.3e-20 101.7 67 73.1
Dinv11736 Davidia involucrata HOM05D001602 ORTHO05D001470 4.4e-20 101.3 67 73.1
Glyma.03G073748 Glycine max HOM05D001602 ORTHO05D001470 4.4e-20 101.3 67 71.6
Gohir.A12G088350 Gossypium hirsutum HOM05D001602 ORTHO05D001470 4.4e-20 101.3 67 73.1
Gohir.D12G086700 Gossypium hirsutum HOM05D001602 ORTHO05D001470 4.4e-20 101.3 67 73.1
Gorai.008G096900 Gossypium raimondii HOM05D001602 ORTHO05D001470 4.4e-20 101.3 67 73.1
arahy.Tifrunner.gnm1.ann1.PY9KME Arachis hypogaea HOM05D001602 ORTHO05D001470 5.7e-20 100.9 67 73.1
HanXRQChr03g0089261 Helianthus annuus HOM05D001602 ORTHO05D001470 5.7e-20 100.9 67 71.6
Phvul.004G136600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 5.7e-20 100.9 67 71.6
Atru.chr2.263 Acer truncatum HOM05D001602 ORTHO05D001470 7.4e-20 100.5 67 73.1
SalBow2G2154 Salvia bowleyana HOM05D001602 ORTHO05D001470 7.4e-20 100.5 67 73.1
Ca_25281_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 9.7e-20 100.1 67 71.6
Lj6C106G8 Lonicera japonica HOM05D001602 ORTHO05D001470 9.7e-20 100.1 69 73.9
GSVIVG01024244001 Vitis vinifera HOM05D001602 ORTHO05D001470 9.7e-20 100.1 67 73.1
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 1.3e-19 99.8 67 71.6
Glyma.16G128200 Glycine max HOM05D001602 ORTHO05D001470 1.3e-19 99.8 67 70.1
Medtr6g068940 Medicago truncatula HOM05D001602 ORTHO05D001470 1.3e-19 99.8 67 71.6
Nitab4.5_0000242g0140 Nicotiana tabacum HOM05D001602 ORTHO05D001470 1.3e-19 99.8 62 79.0
Psat1g018240 Pisum sativum HOM05D001602 ORTHO05D001470 1.3e-19 99.8 67 70.1
FvH4_5g18590 Fragaria vesca HOM05D001602 ORTHO05D001470 2.2e-19 99.0 69 69.6
FAN04G0471 Fragaria x ananassa HOM05D001602 ORTHO05D001470 2.2e-19 99.0 69 69.6
FAN13G1167 Fragaria x ananassa HOM05D001602 ORTHO05D001470 2.2e-19 99.0 69 69.6
FAN18G2659 Fragaria x ananassa HOM05D000219 ORTHO05D000226 2.2e-19 99.0 69 69.6
Lsat_1_v5_gn_3_109781 Lactuca sativa HOM05D001602 ORTHO05D001470 3.7e-19 98.2 67 70.1
Lalb_Chr22g0354061 Lupinus albus HOM05D001602 ORTHO05D001470 3.7e-19 98.2 67 73.1
VMungo0464G1375 Vigna mungo HOM05D001602 ORTHO05D001470 3.7e-19 98.2 62 72.6
Potri.017G153900 Populus trichocarpa HOM05D001602 ORTHO05D001470 4.8e-19 97.8 67 71.6
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 6.3e-19 97.4 67 70.1
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 6.3e-19 97.4 62 79.0
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 8.2e-19 97.1 67 71.6
SGA_v2.0_scaffold17G08162 Striga asiatica HOM05D001602 ORTHO05D001470 8.2e-19 97.1 61 75.4
MSTRG.4296 Avicennia marina HOM05D001602 ORTHO05D001470 1.1e-18 96.7 61 75.4
CAN.G466.9 Capsicum annuum HOM05D001602 ORTHO05D001470 1.1e-18 96.7 62 75.8
CANSAT11G0022 Cannabis sativa HOM05D001602 ORTHO05D001470 1.4e-18 96.3 61 73.8
Eucgr.K02332 Eucalyptus grandis HOM05D001602 ORTHO05D001470 1.4e-18 96.3 61 73.8
Lj2g0019069 Lotus japonicus HOM05D001602 ORTHO05D001470 1.4e-18 96.3 67 70.1
PGSC0003DMG400014616 Solanum tuberosum HOM05D001602 ORTHO05D001470 1.4e-18 96.3 62 77.4
TAR636G0341 Trochodendron aralioides HOM05D000219 ORTHO05D000226 1.4e-18 96.3 67 70.1
MBI03_g11897_MAGBIO Magnolia biondii HOM05D001602 ORTHO05D001470 1.8e-18 95.9 69 68.1
Manes.02G226200 Manihot esculenta HOM05D001602 ORTHO05D001470 1.8e-18 95.9 67 70.1
Solyc08g014040.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 1.8e-18 95.9 62 75.8
Sopen08g004920 Solanum pennellii HOM05D001602 ORTHO05D001470 1.8e-18 95.9 62 75.8
TWI81G0762 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 2.4e-18 95.5 67 68.7
Cc00_g15860 Coffea canephora HOM05D001602 ORTHO05D001470 4.1e-18 94.7 67 70.1
Nn3g18545 Nelumbo nucifera HOM05D001602 ORTHO05D001470 4.1e-18 94.7 67 67.2
RcHm_v2.0_Chr7g0176921 Rosa chinensis HOM05D001602 ORTHO05D001470 5.3e-18 94.4 67 67.2
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 5.3e-18 94.4 67 71.6
ATR0124G013 Amborella trichopoda HOM05D001602 ORTHO05D001470 7.0e-18 94.0 67 65.7
Migut.G01316 Erythranthe guttata HOM05D001602 ORTHO05D001470 1.2e-17 93.2 67 70.1
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 1.6e-17 92.8 64 70.3
Prupe.5G245300 Prunus persica HOM05D001602 ORTHO05D001470 1.6e-17 92.8 67 65.7
Sc10g0008650 Simmondsia chinensis HOM05D001602 ORTHO05D001470 1.6e-17 92.8 64 67.2
Aqoxy2G00391 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 2.6e-17 92.0 67 65.7
PSO782G0075 Papaver somniferum HOM05D001602 ORTHO05D001470 3.5e-17 91.7 69 62.3
CiPaw.15G107800 Carya illinoinensis HOM05D001602 ORTHO05D001470 5.9e-17 90.9 67 64.2
MD06G1241200 Malus domestica HOM05D001602 ORTHO05D001470 5.9e-17 90.9 67 65.7
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 7.7e-17 90.5 64 67.2
EL10Ac4g09667 Beta vulgaris HOM05D001602 ORTHO05D001470 7.7e-17 90.5 61 70.5
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 7.7e-17 90.5 64 67.2
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 1.3e-16 89.7 64 67.2
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 1.3e-16 89.7 64 67.2
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 1.3e-16 89.7 64 67.2
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 1.3e-16 89.7 64 67.2
AUR62038565 Chenopodium quinoa HOM05D001602 ORTHO05D001470 1.3e-16 89.7 61 72.1
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 1.3e-16 89.7 64 67.2
A07p29850 Brassica napus HOM05D001602 ORTHO05D001470 1.7e-16 89.4 64 65.6
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 1.7e-16 89.4 64 65.6
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 1.7e-16 89.4 64 67.2
AT1G73320 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 2.2e-16 89.0 64 65.6
Ah.02g126730 Amaranthus hybridus HOM05D001602 ORTHO05D001470 2.9e-16 88.6 61 70.5
BcaB03g15706 Brassica carinata HOM05D001602 ORTHO05D001470 2.9e-16 88.6 64 65.6
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis HOM05D001602 ORTHO05D001470 3.8e-16 88.2 64 62.5
PSO063G2222 Papaver somniferum HOM05D001602 ORTHO05D001470 5.0e-16 87.8 80 55.0
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 5.0e-16 87.8 60 68.3
SEGI_26569 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 6.5e-16 87.4 67 64.2
QL10p033772 Quercus lobata HOM05D001602 ORTHO05D001470 2.5e-15 85.5 63 65.1
Hund22357 Selenicereus undatus HOM05D001602 ORTHO05D001470 2.5e-15 85.5 61 65.6
HPP92_021095 Vanilla planifolia HOM05D001602 ORTHO05D001470 2.5e-15 85.5 60 70.0
CDE07G0357 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 4.2e-15 84.7 63 65.1
Glyma.16G210702 Glycine max HOM05D001602 ORTHO05D001470 5.5e-15 84.3 53 73.6
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 5.5e-15 84.3 67 59.7
Os06g0101100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 7.2e-15 84.0 67 58.2
Lj6P105T20 Lonicera japonica HOM05D001602 ORTHO05D001470 1.2e-14 83.2 53 75.5
ECA240G4616 Erigeron canadensis HOM05D001602 ORTHO05D001470 2.7e-14 82.0 53 69.8
MD14G1247200 Malus domestica HOM05D001602 ORTHO05D001470 4.7e-14 81.3 68 60.3
Peaxi162Scf00075g01540 Petunia axillaris HOM05D001602 ORTHO05D001470 1.4e-13 79.7 53 71.7
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.8e-13 79.3 64 56.2
MBI03_g44530_MAGBIO Magnolia biondii HOM05D001602 ORTHO05D001470 2.0e-12 75.9 51 74.5
Hma1.2p1_0098F.1_g048250 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 4.4e-12 74.7 49 69.4
Pp3c10_13020 Physcomitrium patens HOM05D001602 ORTHO05D001470 1.7e-11 72.8 59 57.6
AUR62042010 Chenopodium quinoa HOM05D001602 ORTHO05D001470 2.2e-11 72.4 61 60.7
Aa31LG4G3580 Aethionema arabicum HOM05D001602 ORTHO05D001470 8.3e-11 70.5 64 59.4
Cpa.g.sc168.17 Carica papaya HOM05D001602 ORTHO05D001470 9.1e-10 67.0 53 58.5
CSS0001278 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 2.9e-08 62.0 34 88.2
COL.COLO4_21203 Corchorus olitorius HOM05D001602 ORTHO05D001470 9.4e-07 57.0 65 47.7
SMO358G0271 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.6e-06 56.2 60 45.0
Pp3c10_3250 Physcomitrium patens HOM05D001602 ORTHO05D001470 2.1e-06 55.8 59 49.2
arahy.Tifrunner.gnm1.ann1.XS70FB Arachis hypogaea HOM05D001602 ORTHO05D001470 2.7e-06 55.5 60 48.3
Cpa.g.sc65.35 Carica papaya HOM05D001602 ORTHO05D001470 2.7e-06 55.5 60 50.0
Lalb_Chr03g0027651 Lupinus albus HOM05D001602 ORTHO05D001470 2.7e-06 55.5 60 48.3
Gohir.A06G084000 Gossypium hirsutum HOM05D001602 ORTHO05D001470 3.6e-06 55.1 65 46.2
Gohir.D06G082600 Gossypium hirsutum HOM05D001602 ORTHO05D001470 3.6e-06 55.1 65 46.2
Gorai.010G096000 Gossypium raimondii HOM05D001602 ORTHO05D001470 3.6e-06 55.1 65 46.2
Mapoly0123s0035 Marchantia polymorpha HOM05D001602 ORTHO05D001470 3.6e-06 55.1 60 48.3
Potri.009G006800 Populus trichocarpa HOM05D001602 ORTHO05D001470 3.6e-06 55.1 60 50.0
unitig_746.g26635 Utricularia gibba HOM05D001602 ORTHO05D001470 3.6e-06 55.1 60 48.3
arahy.Tifrunner.gnm1.ann1.T06XUN Arachis hypogaea HOM05D001602 ORTHO05D001470 4.7e-06 54.7 60 46.7
Duzib187G1899 Durio zibethinus HOM05D001602 ORTHO05D001470 4.7e-06 54.7 65 44.6
Manes.04G014600 Manihot esculenta HOM05D001602 ORTHO05D001470 4.7e-06 54.7 65 47.7
Peaxi162Scf00892g00120 Petunia axillaris HOM05D001602 ORTHO05D001470 4.7e-06 54.7 60 50.0
ATR0105G012 Amborella trichopoda HOM05D001602 ORTHO05D001470 6.1e-06 54.3 59 50.8
CDE09G0573 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 6.1e-06 54.3 75 45.3
FvH4_3g30920 Fragaria vesca HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 46.7
FAN21G1863 Fragaria x ananassa HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 46.7
Glyma.11G194000 Glycine max HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 48.3
Medtr4g057605 Medicago truncatula HOM05D001602 ORTHO05D001470 6.1e-06 54.3 59 47.5
Os02g0818700 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 6.1e-06 54.3 76 42.1
Phvul.011G084600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 48.3
RcHm_v2.0_Chr5g0057461 Rosa chinensis HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 46.7
Thecc.09G069900 Theobroma cacao HOM05D001602 ORTHO05D001470 6.1e-06 54.3 65 44.6
TAR636G1265 Trochodendron aralioides HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 50.0
VMungo1127G0611 Vigna mungo HOM05D001602 ORTHO05D001470 6.1e-06 54.3 60 48.3
MELO3C026904.2 Cucumis melo HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3
CsaV3_6G014250 Cucumis sativus L. HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3
Lj3g0021801 Lotus japonicus HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 46.7
Nn6g35272 Nelumbo nucifera HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 8.0e-06 53.9 57 52.6
Solyc11g068990.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3
Sopen11g027700 Solanum pennellii HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3
PGSC0003DMG400019626 Solanum tuberosum HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3
SGA_v2.0_scaffold263G45964 Striga asiatica HOM05D001602 ORTHO05D001470 8.0e-06 53.9 60 48.3


User provided reference genes

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