Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.6e-29 129.4 63 100.0
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.0e-19 96.3 70 71.4
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.9e-17 91.3 85 60.0
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 2.9e-17 91.3 85 58.8
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 3.8e-17 90.9 85 58.8
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 8.5e-17 89.7 85 57.6
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 8.5e-17 89.7 85 57.6
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.4e-16 89.0 85 57.6
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 1.4e-16 89.0 85 57.6
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 2.5e-16 88.2 85 57.6
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 3.2e-16 87.8 85 57.6
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 4.2e-16 87.4 85 56.5
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.2e-16 87.4 85 55.3
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.2e-16 87.4 84 58.3
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.2e-16 87.4 69 66.7
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 5.5e-16 87.0 85 56.5
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 5.5e-16 87.0 85 57.6
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 5.5e-16 87.0 85 56.5
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 5.5e-16 87.0 85 55.3
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 5.5e-16 87.0 85 56.5
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 7.2e-16 86.7 85 55.3
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 7.2e-16 86.7 85 56.5
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 7.2e-16 86.7 85 56.5
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 7.2e-16 86.7 85 56.5
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 9.3e-16 86.3 85 55.3
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 9.3e-16 86.3 85 55.3
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 9.3e-16 86.3 85 55.3
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.2e-15 85.9 85 55.3
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.2e-15 85.9 101 49.5
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.6e-15 85.5 85 54.1
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.6e-15 85.5 85 55.3
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.6e-15 85.5 85 55.3
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 2.1e-15 85.1 85 54.1
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 2.1e-15 85.1 85 55.3
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 2.1e-15 85.1 85 54.1
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.1e-15 85.1 84 56.0
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.1e-15 85.1 85 55.3
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.1e-15 85.1 85 55.3
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 2.7e-15 84.7 85 55.3
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 2.7e-15 84.7 85 55.3
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.7e-15 84.7 85 55.3
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.7e-15 84.7 85 55.3
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.7e-15 84.7 85 55.3
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.7e-15 84.7 85 55.3
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 3.6e-15 84.3 85 54.1
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 3.6e-15 84.3 85 52.9
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 4.6e-15 84.0 85 55.3
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 6.1e-15 83.6 85 54.1
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 6.1e-15 83.6 85 54.1
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 6.1e-15 83.6 85 52.9
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 6.1e-15 83.6 85 52.9
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 6.1e-15 83.6 85 56.5
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 6.1e-15 83.6 84 54.8
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.0e-14 82.8 85 54.1
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 1.0e-14 82.8 85 54.1
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 1.0e-14 82.8 85 54.1
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.0e-14 82.8 85 54.1
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.0e-14 82.8 84 56.0
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.3e-14 82.4 85 52.9
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 52.9
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 52.9
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 52.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 52.9
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 51.8
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 54.1
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.8e-14 82.0 85 50.6
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 2.3e-14 81.6 85 54.1
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.3e-14 81.6 85 52.9
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.3e-14 81.6 84 54.8
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.3e-14 81.6 84 54.8
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.3e-14 81.6 84 54.8
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 3.0e-14 81.3 84 53.6
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 3.0e-14 81.3 85 51.8
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 3.0e-14 81.3 85 52.9
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 3.0e-14 81.3 85 52.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 5.1e-14 80.5 85 51.8
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 5.1e-14 80.5 85 51.8
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.1e-14 80.5 84 53.6
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 5.1e-14 80.5 84 53.6
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 5.1e-14 80.5 71 59.2
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 6.7e-14 80.1 84 51.2
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 6.7e-14 80.1 85 51.8
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 6.7e-14 80.1 85 52.9
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 6.7e-14 80.1 84 54.8
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 6.7e-14 80.1 85 51.8
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 6.7e-14 80.1 84 53.6
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 6.7e-14 80.1 85 52.9
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 8.7e-14 79.7 84 51.2
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 8.7e-14 79.7 84 52.4
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.1e-13 79.3 85 50.6
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.1e-13 79.3 84 53.6
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.1e-13 79.3 84 53.6
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 1.5e-13 79.0 84 51.2
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.9e-13 78.6 85 51.8
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.9e-13 78.6 70 57.1
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.9e-13 78.6 85 51.8
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 2.5e-13 78.2 83 51.8
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 3.3e-13 77.8 84 50.0
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 4.3e-13 77.4 82 52.4
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 4.3e-13 77.4 84 50.0
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.3e-13 77.4 84 50.0
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.3e-13 77.4 84 50.0
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.3e-13 77.4 84 50.0
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.3e-13 77.4 84 50.0
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 4.3e-13 77.4 85 49.4
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 7.4e-13 76.6 84 51.2
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 7.4e-13 76.6 84 50.0
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 7.4e-13 76.6 84 50.0
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 7.4e-13 76.6 101 45.5
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 9.7e-13 76.3 84 50.0
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.3e-12 75.9 84 51.2
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 1.3e-12 75.9 84 50.0
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 1.3e-12 75.9 84 50.0
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.3e-12 75.9 84 50.0
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 1.3e-12 75.9 85 50.6
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 1.3e-12 75.9 84 52.4
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 1.6e-12 75.5 84 50.0
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 1.6e-12 75.5 85 49.4
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 1.6e-12 75.5 85 49.4
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.6e-12 75.5 84 50.0
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 2.2e-12 75.1 82 51.2
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 2.2e-12 75.1 84 50.0
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 2.2e-12 75.1 84 50.0
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 3.7e-12 74.3 82 51.2
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 3.7e-12 74.3 69 53.6
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 4.8e-12 73.9 86 50.0
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 6.3e-12 73.6 84 48.8
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 6.3e-12 73.6 84 48.8
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 6.3e-12 73.6 84 48.8
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 6.3e-12 73.6 84 48.8
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 6.3e-12 73.6 80 51.2
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 8.2e-12 73.2 83 49.4
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.1e-11 72.8 85 45.9
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-11 72.8 83 49.4
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.8e-11 72.0 84 47.6
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 3.1e-11 71.2 84 47.6
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 3.1e-11 71.2 84 47.6
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 4.1e-11 70.9 82 48.8
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 6.9e-11 70.1 84 44.0
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 9.1e-11 69.7 84 47.6
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 9.1e-11 69.7 84 47.6
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-10 69.3 80 50.0
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-10 69.3 80 50.0
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.5e-10 68.9 81 49.4
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 4.5e-10 67.4 83 45.8
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.7e-09 65.5 79 48.1
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.5e-08 61.6 39 74.4
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 3.2e-08 61.2 39 71.8
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 5.5e-08 60.5 78 46.2
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 9.4e-08 59.7 80 41.2
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-07 59.3 74 47.3
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 2.7e-07 58.2 53 52.8
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 3.6e-07 57.8 74 45.9
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 3.6e-07 57.8 39 69.2
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 6.1e-07 57.0 39 66.7
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.0e-06 54.7 59 47.5


User provided reference genes

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