Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 2174.8 1088 100.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 2157.9 1088 99.2
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1919.4 1088 86.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1900.6 1086 86.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1864.7 1082 85.4
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1864.4 1088 84.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1863.2 1116 83.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1849.3 1086 83.6
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1766.1 1086 80.8
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1759.2 1090 79.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1738.8 1080 78.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1729.5 1089 78.4
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1727.2 1090 78.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1725.3 1081 79.3
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 1088 77.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 996 85.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1711.4 1087 77.9
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1708.7 1090 77.1
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1705.3 1092 77.3
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1083 77.1
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1703.0 1087 77.1
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1699.9 1079 78.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1696.0 1087 76.6
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1689.1 1080 77.3
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1686.4 1084 76.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1088 76.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1676.8 1077 76.9
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1084 75.6
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1676.0 1096 75.5
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1675.6 1088 75.9
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1675.2 1084 76.4
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1672.5 1093 76.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1098 75.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1668.3 1085 75.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1083 75.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1667.1 1088 75.6
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1107 74.8
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1084 75.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1077 76.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1081 75.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1088 75.5
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1088 75.3
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1662.5 1087 75.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1662.5 1089 75.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1661.7 1086 75.3
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1661.0 1069 77.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1660.6 1087 74.5
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1659.4 1086 75.0
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1077 75.9
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1656.7 1082 75.3
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1654.0 1086 74.4
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1653.3 1170 71.5
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1088 75.6
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1650.6 1089 75.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1649.4 1080 74.7
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1647.1 1170 71.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1644.4 1080 75.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1642.9 1091 74.3
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1640.9 1085 74.5
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1077 75.6
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1637.1 1083 73.8
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1637.1 1083 73.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1085 74.7
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1635.5 1103 72.8
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1634.0 1085 74.3
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1083 74.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1627.8 1091 72.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1079 74.9
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1624.0 1110 73.7
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1622.8 1089 73.9
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1622.1 1089 74.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1084 74.3
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1618.6 1080 73.7
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1617.8 1088 74.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1080 73.6
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1615.9 1089 73.4
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1613.2 1079 73.8
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1609.7 1089 73.2
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1609.7 1150 69.7
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1608.2 1080 73.8
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1607.8 1081 73.5
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1089 73.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1016 78.0
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1085 72.6
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 1080 73.2
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1109 72.0
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1595.1 1080 73.0
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1069 73.7
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1080 73.0
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1080 73.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1589.7 1078 71.4
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1087 72.0
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1588.2 1098 72.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1586.2 1078 72.1
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1583.2 1080 72.6
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1582.0 1080 72.2
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1080 72.5
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1080 72.4
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1078 72.4
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1074 71.7
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1110 70.0
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1050 72.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 1092 72.5
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 996 76.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1085 70.3
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 980 75.5
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1089 69.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1112 68.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1077 67.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1452.2 1009 72.4
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1447.2 1098 64.5
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1251.5 792 77.7
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1246.1 698 88.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1244.2 717 86.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1226.8 680 88.4
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1176.8 1079 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1174.8 1087 53.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1166.0 751 76.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1156.4 1121 51.7
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 1085 52.0
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1125.5 1082 52.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 6.4e-306 1054.3 837 62.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 5.0e-282 974.9 815 62.5
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.5e-267 925.6 693 69.8
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 8.5e-266 921.0 614 75.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.2e-254 884.0 989 52.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.7e-254 881.7 953 48.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.3e-241 839.3 504 81.3
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.4e-238 828.9 632 65.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 9.3e-188 661.8 608 56.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.8e-170 604.4 434 70.7
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.6e-155 554.7 312 84.3
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.6e-142 511.5 384 68.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.5e-134 483.8 312 75.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.3e-77 295.8 290 54.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 9.0e-74 283.1 244 61.1
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.2e-67 260.4 205 63.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 3.2e-63 248.1 136 80.1
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.0e-48 199.9 139 67.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.4e-39 169.5 133 62.4
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.7e-36 156.8 200 48.0
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 3.8e-32 144.8 88 83.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 6.5e-32 144.1 156 50.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 9.4e-31 140.2 73 86.3
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 5.7e-28 131.0 108 59.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 4.5e-25 121.3 94 66.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.1e-15 90.1 123 45.5
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 9.5e-15 87.0 47 89.4
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.4e-13 83.2 49 75.5
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.3e-08 66.6 77 41.6
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 6.6e-08 64.3 39 76.9


User provided reference genes

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