Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.4e-157 558.1 282 100.0
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 6.1e-127 458.0 282 84.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.0e-125 453.0 295 80.7
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.2e-124 449.5 279 83.5
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 4.1e-123 445.3 276 84.4
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.3e-112 408.7 317 70.7
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.3e-112 408.7 317 70.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.4e-107 393.7 286 73.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.4e-107 393.7 283 73.1
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 9.2e-107 391.0 319 68.0
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.3e-105 386.3 288 72.2
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.6e-104 381.7 291 72.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 4.0e-102 375.6 231 82.3
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.9e-99 366.7 279 70.6
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 3.2e-99 365.9 286 68.2
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 7.1e-99 364.8 291 68.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.9e-97 359.0 294 64.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 6.6e-97 358.2 281 69.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 7.3e-96 354.8 289 65.1
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.2e-95 354.0 305 64.3
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.8e-95 352.8 285 65.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 8.1e-95 351.3 271 65.7
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 5.8e-93 345.1 284 68.7
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-91 340.9 292 66.8
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.2e-91 339.3 300 64.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.6e-90 337.0 290 64.8
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.1e-90 336.7 293 65.2
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.7e-90 336.3 288 62.8
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.3e-89 333.2 284 65.8
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.3e-89 333.2 286 65.0
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 3.6e-87 325.9 286 63.6
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 8.1e-87 324.7 287 63.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.4e-86 323.9 284 63.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-86 323.6 284 63.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.0e-85 320.1 284 62.7
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 8.4e-84 314.7 305 61.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.9e-83 313.5 292 62.7
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 4.6e-82 308.9 258 64.7
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.3e-80 302.8 286 61.9
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.3e-80 302.4 281 59.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.6e-80 302.0 283 59.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 5.6e-80 302.0 282 60.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.6e-79 300.4 283 60.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.6e-79 299.3 286 61.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 8.1e-79 298.1 292 57.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.4e-78 297.4 294 59.5
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.4e-78 297.4 280 59.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.0e-78 295.8 290 62.1
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.3e-78 295.4 281 59.8
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 5.3e-78 295.4 283 59.0
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.2e-77 294.3 295 59.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.2e-77 294.3 283 60.1
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.0e-77 293.5 302 58.6
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.6e-77 293.1 250 68.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.5e-77 292.4 282 62.1
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 7.6e-77 291.6 300 55.7
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.6e-77 291.6 284 61.3
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.6e-77 291.6 284 60.9
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.3e-76 290.8 287 57.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.7e-76 290.4 284 60.9
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.8e-76 289.3 284 60.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.8e-76 289.3 284 60.2
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-76 289.3 276 58.7
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.8e-76 289.3 282 60.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.4e-76 288.5 286 56.6
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 6.4e-76 288.5 307 55.7
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.4e-75 287.3 284 58.8
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 7.1e-75 285.0 288 59.4
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.1e-75 285.0 284 59.9
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 7.1e-75 285.0 284 60.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 7.1e-75 285.0 295 58.3
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.7e-74 283.1 278 59.7
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 6.7e-73 278.5 283 56.9
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.5e-72 276.6 283 59.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.5e-72 276.6 303 56.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 3.3e-72 276.2 283 58.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 5.6e-72 275.4 281 57.7
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 5.6e-72 275.4 329 50.2
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 7.4e-72 275.0 283 57.6
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 7.4e-72 275.0 271 59.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-71 274.2 260 57.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.6e-71 273.9 281 56.6
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.8e-71 273.1 302 55.6
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 6.2e-71 271.9 294 57.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.8e-70 270.4 281 55.2
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.1e-70 269.6 286 55.9
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.1e-70 269.6 286 56.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 6.9e-70 268.5 289 57.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 9.0e-70 268.1 302 56.3
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.0e-69 266.9 281 54.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 4.5e-69 265.8 286 55.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 4.5e-69 265.8 286 55.2
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.6e-69 265.0 283 55.8
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.0e-68 264.6 280 55.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.0e-68 264.6 285 55.4
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.9e-68 263.1 286 55.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.9e-68 263.1 293 57.0
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.1e-67 261.2 280 57.1
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.9e-67 260.4 291 55.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.2e-66 257.7 277 55.2
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.1e-66 256.9 284 54.6
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 4.6e-66 255.8 287 54.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 6.0e-66 255.4 284 54.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-65 254.2 245 59.2
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 8.7e-65 251.5 162 79.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 8.7e-65 251.5 283 53.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.9e-64 250.4 202 65.3
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.5e-64 250.0 222 62.6
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.8e-63 245.7 167 77.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.4e-62 244.2 222 61.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.8e-62 243.8 295 51.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 4.0e-62 242.7 297 50.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.3e-62 242.3 279 54.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.2e-61 241.1 295 51.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 3.4e-61 239.6 297 50.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.0e-60 238.0 156 76.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.7e-60 237.3 287 53.7
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.7e-60 237.3 287 51.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 6.5e-60 235.3 298 49.7
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 6.5e-60 235.3 285 55.8
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 8.4e-60 235.0 298 51.3
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.5e-59 233.4 289 52.9
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 4.2e-59 232.6 288 52.1
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 7.1e-59 231.9 301 49.2
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-58 231.1 298 50.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.1e-58 228.8 161 73.9
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.3e-57 226.9 291 49.8
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.5e-56 224.2 286 49.0
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.8e-55 219.9 296 49.3
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 5.3e-54 215.7 287 50.2
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.4e-53 213.0 238 55.0
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.3e-52 211.1 288 47.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.8e-52 209.5 168 65.5
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.5e-52 208.8 284 48.2
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.4e-51 207.6 127 78.7
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.0e-49 201.4 289 46.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.9e-49 199.5 286 45.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.1e-48 198.0 288 46.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 7.7e-45 185.3 281 45.9
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.4e-43 178.3 280 42.5
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.1e-42 177.2 176 56.2
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.7e-40 169.1 134 72.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 9.1e-38 161.8 267 41.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.0e-37 160.6 234 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.5e-36 155.2 124 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.2e-35 153.3 308 37.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.7e-33 145.6 294 38.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.0e-32 144.1 284 39.1
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 7.4e-32 142.1 128 57.8
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 2.8e-31 140.2 156 57.7
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-31 139.8 272 39.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.8e-31 139.4 120 60.8
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.3e-25 120.6 191 39.3
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.0e-24 117.5 79 77.2
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 9.1e-22 108.6 171 41.5
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.2e-21 108.2 125 56.0
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 7.7e-21 105.5 155 49.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.2e-19 99.8 106 62.3
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 2.7e-18 97.1 106 53.8
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.7e-12 77.8 57 63.2
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.2e-10 71.6 111 46.8
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 6.1e-10 69.3 80 57.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.4e-08 63.2 50 66.0


User provided reference genes

Program Settings