Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 2723.3 1419 100.0
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 2679.0 1419 98.7
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1826.2 1409 70.4
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1766.1 1434 67.5
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1692.6 1429 64.5
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1607.0 1281 66.7
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1585.5 1410 61.8
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1565.8 1429 60.7
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1555.8 1413 61.0
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1552.3 1413 60.4
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1550.0 1417 61.7
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1535.8 1415 60.8
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1522.7 1427 59.3
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1513.4 1437 59.5
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1508.4 1241 63.9
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1506.1 1420 59.2
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1505.7 1418 59.2
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1497.6 1250 64.0
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1497.6 1429 59.2
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1496.5 1233 66.3
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1495.7 1430 58.0
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1495.3 1436 57.0
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1489.9 1441 58.3
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1479.9 1448 56.5
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1477.6 1415 58.7
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1474.5 1452 56.3
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1470.7 1414 58.8
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1463.0 1426 57.5
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1446.4 1416 57.5
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1444.9 1418 58.4
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1421.8 1425 56.6
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1418.7 1389 56.4
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1417.9 1440 55.6
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1414.8 1430 54.6
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1412.9 1445 54.4
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1402.5 1389 56.0
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1401.7 1422 55.3
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1399.0 1448 55.6
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1394.0 1234 61.8
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1390.9 1419 54.9
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1385.5 1234 61.3
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1373.2 1416 56.7
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1345.9 1444 52.8
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1278.8 1413 51.9
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1275.8 1369 52.4
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1265.0 1446 50.6
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1261.9 1349 52.8
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1259.6 1390 51.8
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1259.6 1181 59.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1256.5 1361 52.2
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1256.1 1402 51.8
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1249.2 1441 50.2
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1248.8 1252 54.6
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1248.4 1407 50.9
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1210.3 1203 56.9
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1201.8 1098 60.5
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1164.4 1122 57.6
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1161.4 1390 49.3
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 0.0e+00 1128.6 864 70.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1121.3 1038 60.1
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1100.9 1051 59.1
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 0.0e+00 1083.9 1436 46.4
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 0.0e+00 1080.9 1139 54.4
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 4.9e-311 1071.6 853 68.5
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.1e-309 1066.2 1041 57.4
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.8e-308 1063.1 1039 57.7
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 2.5e-294 1016.1 1448 43.6
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.5e-281 973.0 1363 43.3
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.4e-263 914.1 712 69.9
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 4.8e-245 852.4 1370 39.9
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 4.7e-240 835.9 1431 38.5
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.7e-235 820.1 712 62.5
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 2.8e-216 756.9 1009 46.4
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 4.7e-216 756.1 1015 47.3
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 2.2e-205 720.7 624 63.6
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 5.6e-193 679.5 1506 34.3
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 9.0e-183 645.6 1492 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.9e-177 627.9 1352 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.8e-175 621.3 1441 33.0
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 7.0e-143 513.1 670 47.3
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 3.1e-127 461.1 476 53.4
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 2.3e-98 365.2 1318 26.7
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 7.1e-95 353.6 291 65.3
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 4.3e-84 317.8 341 54.3
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 8.1e-83 313.5 357 49.6
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 2.0e-73 282.3 271 56.8
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 3.7e-67 261.5 276 55.1
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 1.9e-52 212.6 263 47.9
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 1.9e-47 196.1 200 57.0
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 2.5e-44 185.7 295 41.4
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.1e-42 178.7 121 80.2
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.7e-35 156.4 105 81.0
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.7e-30 139.0 108 62.0
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 4.4e-20 105.1 150 50.0
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 4.5e-17 95.1 87 60.9
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 5.2e-13 81.6 118 43.2
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 7.5e-12 77.8 278 25.9
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 2.1e-06 59.7 93 40.9


User provided reference genes

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