Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.3e-180 636.3 333 100.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.3e-127 460.3 334 74.0
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.7e-124 449.9 332 71.4
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.1e-123 444.5 328 73.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.8e-121 439.9 383 64.0
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.0e-121 439.1 331 72.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 8.7e-121 437.6 331 71.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 3.0e-113 412.5 332 66.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.1e-112 410.6 328 67.7
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.1e-112 410.6 332 66.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 5.7e-112 408.3 332 66.6
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.7e-111 406.8 332 69.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.3e-111 404.8 330 65.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.4e-110 403.7 332 65.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.5e-109 398.7 332 65.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.5e-108 394.8 333 66.7
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 8.5e-108 394.4 332 63.6
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.9e-107 393.3 332 65.4
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.2e-107 392.1 334 65.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 7.2e-107 391.3 332 63.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 9.4e-107 391.0 332 63.6
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.1e-105 385.2 326 63.5
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 6.7e-105 384.8 332 63.0
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 8.8e-105 384.4 328 65.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.0e-104 383.3 326 63.2
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.6e-104 382.9 326 63.2
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.6e-104 382.9 334 62.6
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.7e-104 380.9 331 66.5
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 9.7e-104 380.9 332 61.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.3e-103 380.6 331 66.5
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.3e-103 380.6 332 63.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.2e-103 379.8 332 62.0
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-102 377.5 332 62.3
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-102 377.1 332 61.4
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.6e-101 372.9 332 62.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.9e-101 371.7 330 63.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.7e-100 370.2 334 63.2
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.9e-100 369.4 332 62.7
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 5.0e-100 368.6 332 62.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 6.5e-100 368.2 332 61.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 8.5e-100 367.9 339 63.7
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.9e-99 366.7 332 59.9
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 9.4e-99 364.4 333 59.5
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.1e-98 363.2 332 61.1
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.6e-98 362.5 333 61.3
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.4e-97 360.5 391 53.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.3e-97 359.8 332 59.6
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.0e-96 356.7 332 60.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 5.7e-96 355.1 332 59.9
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 9.7e-96 354.4 341 59.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.1e-94 350.9 332 60.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-94 349.4 337 59.6
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.9e-91 340.1 391 51.4
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.3e-89 333.2 405 51.4
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 4.0e-89 332.4 337 57.3
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 8.8e-89 331.3 332 56.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.2e-88 330.9 329 57.1
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.0e-88 330.1 332 58.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 5.7e-88 328.6 331 55.6
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 9.7e-88 327.8 331 55.3
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.4e-86 323.9 320 58.1
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.8e-86 323.6 331 56.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.4e-86 323.2 331 52.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.1e-86 321.2 332 56.0
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.1e-86 321.2 332 56.0
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 2.7e-85 319.7 331 52.9
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 5.9e-85 318.5 333 54.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 7.7e-85 318.2 331 54.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.9e-84 316.2 326 55.8
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 8.5e-84 314.7 332 54.5
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.5e-83 313.2 332 55.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 8.0e-82 308.1 333 52.3
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.8e-81 307.0 286 60.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.3e-81 306.6 331 52.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 8.8e-81 304.7 389 50.6
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.2e-80 304.3 332 53.9
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.2e-80 304.3 286 60.1
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.2e-80 304.3 321 55.1
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 2.0e-80 303.5 332 53.3
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.6e-80 303.1 341 54.3
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.7e-79 300.4 270 62.2
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.4e-78 295.4 332 51.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.7e-77 293.1 332 50.6
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.5e-77 292.4 332 51.5
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 4.5e-77 292.4 309 56.6
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 5.9e-77 292.0 328 52.7
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.6e-74 282.7 325 50.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 5.2e-73 278.9 373 46.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 6.8e-73 278.5 333 49.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.0e-72 276.9 332 50.9
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.6e-72 276.6 332 52.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-71 273.1 348 47.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.9e-71 272.3 328 52.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.8e-70 270.4 325 52.6
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.1e-70 269.2 325 48.9
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.4e-70 268.9 333 50.2
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.2e-69 267.7 315 49.2
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.5e-69 266.2 325 49.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.2e-66 257.7 336 46.7
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-66 256.5 277 51.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.1e-66 255.4 265 51.7
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 6.1e-66 255.4 364 44.0
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.0e-66 255.0 384 43.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.8e-64 248.8 267 55.1
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 5.8e-64 248.8 275 48.4
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.9e-62 243.8 332 44.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 5.4e-62 242.3 365 43.6
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.7e-61 240.0 331 45.3
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.3e-60 236.9 401 42.1
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.0e-60 236.5 266 53.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.5e-59 233.4 329 43.8
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.5e-59 233.4 332 45.8
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.2e-58 228.8 312 44.2
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 8.0e-58 228.4 333 45.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.4e-57 227.6 302 45.0
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.0e-57 226.1 308 44.8
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 5.2e-57 225.7 333 44.4
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.6e-56 223.4 309 43.4
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 4.4e-56 222.6 332 44.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 9.8e-56 221.5 295 44.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.7e-55 219.5 313 44.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 3.7e-55 219.5 196 59.2
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.4e-54 217.6 199 62.3
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-54 217.6 330 43.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-54 217.6 330 43.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.4e-54 216.9 362 42.0
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-52 211.1 296 41.6
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.1e-52 209.1 294 42.9
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-50 204.5 294 42.5
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-50 204.1 332 42.8
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-49 201.4 182 63.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.8e-49 200.7 310 42.3
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.3e-49 200.3 308 41.6
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 4.4e-48 196.1 302 40.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.8e-48 195.7 210 50.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.9e-48 194.9 372 36.8
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 8.3e-47 191.8 152 66.4
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-46 189.9 279 44.8
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.2e-45 188.0 324 42.0
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 4.6e-45 186.0 180 54.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-44 184.1 146 66.4
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.7e-42 176.0 150 63.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.4e-41 173.7 146 63.7
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.0e-40 170.6 262 42.0
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-38 163.7 156 60.9
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 7.1e-38 162.2 330 37.9
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.2e-37 161.4 312 37.5
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-37 161.4 168 55.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.6e-37 159.5 168 54.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.0e-37 159.1 378 32.8
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 3.3e-35 153.3 226 43.4
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 5.6e-35 152.5 233 45.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.4e-33 147.1 148 51.4
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 6.9e-33 145.6 243 37.9
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.7e-31 141.0 291 37.1
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-31 140.6 194 49.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-30 137.9 134 59.7
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-30 136.3 130 58.5
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-29 134.4 135 59.3
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 9.6e-27 125.2 107 67.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 3.1e-25 120.2 265 33.2
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 9.0e-25 118.6 87 67.8
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.2e-23 114.0 306 34.6
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.7e-20 102.4 214 34.1
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.5e-19 101.3 273 33.0
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.1e-18 97.4 156 39.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.1e-18 97.4 156 39.7
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.2e-18 95.9 48 93.8
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 5.3e-17 92.8 324 29.3
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-15 88.2 227 33.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.3e-15 88.2 227 33.5
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.4e-14 84.7 84 57.1
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 7.1e-14 82.4 206 32.5
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 7.1e-14 82.4 95 51.6
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.5e-13 80.1 225 30.2
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 3.5e-13 80.1 103 54.4
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-10 70.1 60 60.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.4e-09 68.2 54 61.1
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.0e-09 65.5 50 66.0
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.4e-07 58.9 48 66.7
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 9.3e-06 55.5 89 36.0


User provided reference genes

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