Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 8.7e-159 563.5 276 100.0
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.6e-123 446.4 277 79.8
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 4.7e-120 434.9 276 75.0
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.4e-119 433.3 276 75.4
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.0e-119 432.2 276 75.0
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.7e-115 419.1 207 99.5
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 8.6e-114 414.1 277 72.2
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 5.2e-111 404.8 278 72.3
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.9e-109 399.1 207 94.7
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.1e-108 397.1 276 68.8
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 7.0e-108 394.4 273 67.8
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.5e-107 392.1 277 67.1
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 8.6e-106 387.5 276 69.2
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-105 387.1 278 69.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.5e-105 386.0 278 69.1
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 3.3e-105 385.6 277 66.8
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 4.3e-105 385.2 276 66.3
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 4.3e-105 385.2 277 68.6
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 5.6e-105 384.8 276 67.4
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 9.5e-105 384.0 276 65.9
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.1e-104 382.9 276 66.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 3.6e-104 382.1 278 66.5
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 4.7e-104 381.7 276 65.9
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 6.2e-104 381.3 276 65.9
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 6.2e-104 381.3 276 66.3
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 8.0e-104 380.9 273 66.3
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 8.0e-104 380.9 277 67.5
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 1.1e-103 380.6 272 67.6
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.1e-103 379.0 275 68.7
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 4.0e-103 378.6 278 67.6
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 6.8e-103 377.9 278 68.7
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 8.9e-103 377.5 276 65.9
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.6e-102 375.9 276 67.4
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.4e-102 375.6 275 68.0
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.4e-102 375.2 270 67.4
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 7.5e-102 374.4 275 68.7
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 9.8e-102 374.0 276 64.5
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 6.4e-101 371.3 276 64.9
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.1e-100 370.5 250 70.4
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.4e-100 370.2 275 67.6
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.9e-100 369.8 279 68.1
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.2e-100 369.0 276 67.4
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.1e-100 368.6 277 67.1
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.1e-100 368.6 269 68.4
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.4e-100 368.2 240 73.8
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.2e-99 367.1 273 65.2
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.0e-99 366.3 270 67.4
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 2.7e-99 365.9 276 67.8
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.7e-99 365.9 245 71.0
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.5e-99 365.5 269 68.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.6e-99 365.2 245 69.4
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 4.6e-99 365.2 268 66.0
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.0e-98 364.0 276 64.1
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.3e-98 362.8 271 68.3
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.0e-98 362.5 247 71.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.0e-98 361.7 240 73.3
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 5.0e-98 361.7 270 66.3
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.5e-97 360.1 253 70.4
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.5e-97 359.4 233 74.2
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.3e-97 358.6 253 69.2
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 4.3e-97 358.6 276 63.0
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 7.3e-97 357.8 276 62.7
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.2e-96 357.1 233 72.1
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.1e-96 356.3 245 66.9
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.8e-96 355.9 235 71.9
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 2.8e-96 355.9 276 62.7
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 3.6e-96 355.5 276 62.7
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 6.2e-96 354.8 234 70.9
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 8.1e-96 354.4 207 81.2
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.1e-96 354.4 276 62.7
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.1e-95 354.0 276 62.0
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.2e-95 351.7 252 67.1
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 6.8e-95 351.3 270 64.4
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 8.9e-95 350.9 277 61.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 2.6e-94 349.4 276 62.3
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 3.4e-94 349.0 274 61.7
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 3.4e-94 349.0 278 60.8
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 7.5e-94 347.8 228 71.9
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.7e-93 346.7 230 72.2
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 1.9e-92 343.2 254 64.6
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 3.2e-92 342.4 221 73.3
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 4.1e-92 342.0 282 61.3
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 7.1e-92 341.3 252 65.1
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.6e-91 340.1 276 62.7
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.1e-91 339.7 274 61.3
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.5e-91 339.0 276 59.8
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.6e-91 338.6 276 59.8
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.6e-91 338.6 272 61.4
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 7.8e-91 337.8 277 61.0
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.0e-90 337.4 279 59.9
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.0e-90 337.4 276 60.1
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 3.0e-90 335.9 205 76.1
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 3.9e-90 335.5 276 60.5
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.1e-90 335.1 204 76.5
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.5e-89 333.6 252 67.1
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 3.3e-89 332.4 218 72.0
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.2e-88 330.5 245 65.3
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 3.6e-88 328.9 278 61.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 8.1e-88 327.8 276 62.0
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.1e-87 325.9 276 60.9
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 3.1e-87 325.9 224 68.3
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 3.4e-86 322.4 205 75.1
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.9e-85 318.5 255 64.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.6e-83 312.0 204 74.0
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.2e-80 303.9 233 62.2
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.1e-80 303.1 225 64.9
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 3.4e-78 295.8 196 69.9
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.4e-77 291.6 254 59.1
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 5.4e-76 288.5 203 68.5
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.7e-75 286.2 202 68.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 4.6e-75 285.4 209 64.1
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.9e-74 282.3 213 63.8
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.1e-71 274.2 210 62.4
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.4e-71 273.9 215 60.5
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.6e-67 258.8 206 59.7
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.8e-62 241.9 182 65.4
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.9e-61 238.8 197 64.5
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.4e-60 237.3 209 55.5
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 6.0e-59 231.9 256 48.4
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.3e-58 230.7 226 51.3
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 6.7e-58 228.4 130 80.8
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 8.7e-58 228.0 209 53.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.6e-56 223.8 212 54.7
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 2.4e-55 219.9 228 46.9
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.9e-53 213.0 211 52.1
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 3.5e-51 206.1 199 56.8
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.2e-46 191.0 233 39.1
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 8.8e-42 174.9 212 41.5
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.8e-40 169.1 109 74.3
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.1e-36 157.9 139 61.2
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.1e-31 139.8 130 57.7
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 4.1e-31 139.4 111 63.1
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.3e-26 123.6 91 62.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.5e-25 120.9 88 69.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 5.3e-23 112.5 139 48.9
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 2.9e-21 106.7 110 47.3
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 3.8e-21 106.3 110 50.0
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 3.2e-12 76.6 250 31.6
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.2e-10 69.3 44 72.7
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 3.7e-08 63.2 60 55.0
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 7.7e-06 55.5 33 63.6


User provided reference genes

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