Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1258.8 599 100.0
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1199.5 671 87.6
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1135.2 597 89.1
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1105.5 628 84.2
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1098.6 597 84.8
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1088.2 593 85.0
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 597 84.6
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1085.9 597 83.4
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1077.8 597 83.2
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1075.1 588 83.7
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.1e-312 1074.7 597 84.4
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 4.1e-312 1074.7 597 83.4
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 8.2e-312 1073.2 597 82.9
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 8.2e-312 1072.8 597 82.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 1.2e-311 1072.4 608 83.6
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 2.9e-311 1071.2 597 83.8
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 2.9e-311 1071.2 604 83.8
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 1.8e-310 1068.5 597 82.1
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 1.8e-310 1068.5 598 82.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 3.1e-310 1067.8 597 81.7
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 3.1e-310 1067.8 599 83.3
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 4.1e-310 1067.4 584 84.9
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 9.0e-310 1066.2 597 82.2
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 1.5e-309 1065.4 598 82.6
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 4.5e-309 1063.9 588 83.8
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 7.6e-309 1063.1 588 84.5
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 6.5e-308 1060.1 597 81.2
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 3.2e-307 1057.7 597 80.9
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 5.5e-307 1057.0 597 80.9
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 6.0e-306 1053.5 599 82.6
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 7.9e-306 1053.1 593 80.9
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 5.1e-305 1050.4 597 80.7
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 1.5e-304 1048.9 597 79.7
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 1.3e-303 1045.8 598 81.3
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.6e-303 1045.4 598 82.1
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 3.7e-303 1044.3 597 79.7
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 4.8e-303 1043.9 615 79.2
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 6.3e-303 1043.5 588 81.8
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 6.3e-303 1043.5 598 80.8
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 8.2e-303 1043.1 597 80.4
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 8.2e-303 1043.1 638 77.6
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 2.4e-302 1041.6 588 81.5
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 3.1e-302 1041.2 597 80.6
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 1.2e-301 1039.3 597 80.4
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 2.6e-301 1038.1 597 80.1
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 3.4e-301 1037.7 597 79.6
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 2.2e-300 1035.0 598 79.3
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 3.8e-300 1034.2 597 79.6
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 5.0e-300 1033.9 597 80.1
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 3.2e-299 1031.2 740 69.7
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 4.2e-299 1030.8 597 79.4
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 5.5e-299 1030.4 601 79.7
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 1.6e-298 1028.9 588 81.6
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 1.0e-297 1026.2 593 80.4
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 8.8e-297 1023.1 602 79.6
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 9.7e-296 1019.6 597 78.6
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 8.2e-295 1016.5 599 78.0
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 5.3e-294 1013.8 569 82.8
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 5.3e-294 1013.8 597 77.4
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 3.4e-293 1011.1 598 78.9
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 5.9e-293 1010.4 585 81.5
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 8.5e-292 1006.5 595 78.7
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 1.4e-291 1005.7 759 65.6
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 4.7e-290 1000.7 593 77.1
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 4.7e-290 1000.7 617 74.7
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 1.0e-289 999.6 598 78.4
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.0e-288 995.3 597 77.4
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 9.1e-286 986.5 597 76.0
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 1.2e-285 986.1 540 83.1
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 8.5e-284 979.9 597 75.9
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 2.5e-283 978.4 602 76.1
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 2.0e-280 968.8 597 75.7
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.6e-280 968.4 598 74.9
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 4.4e-280 967.6 596 74.8
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 2.8e-279 964.9 597 75.0
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 4.8e-279 964.1 597 74.9
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 4.8e-279 964.1 597 75.0
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 3.1e-278 961.4 584 76.4
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.0e-277 958.7 592 75.0
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 2.5e-275 951.8 597 74.5
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 2.5e-275 951.8 597 74.5
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 2.5e-275 951.8 597 74.5
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 7.2e-275 950.3 636 72.2
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 3.6e-274 948.0 593 74.4
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.1e-267 926.4 592 71.8
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 2.7e-266 921.8 558 76.3
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.8e-265 919.1 534 80.5
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 2.6e-264 915.2 593 72.8
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 1.3e-260 902.9 598 71.9
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 5.0e-260 901.0 590 70.3
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 2.0e-248 862.4 506 78.3
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 4.7e-242 841.3 540 71.5
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 3.3e-235 818.5 523 72.8
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 7.1e-230 800.8 586 62.6
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 8.9e-225 783.9 514 73.9
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 2.6e-224 782.3 593 61.6
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.5e-219 766.5 591 61.1
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 6.0e-197 691.4 371 88.7
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 5.9e-176 621.7 557 57.3
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.0e-175 620.9 378 79.1
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 2.1e-165 586.6 312 83.0
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.2e-162 576.6 373 72.4
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 1.1e-124 451.4 486 50.0
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 5.1e-95 352.8 188 83.5
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 5.8e-83 312.8 745 30.9
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 1.5e-75 288.1 245 60.0
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.5e-62 244.2 200 62.0
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 1.4e-52 211.8 99 91.9
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 5.4e-28 130.2 70 85.7
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 5.4e-28 130.2 70 85.7
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 5.6e-25 120.2 77 67.5
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.8e-24 117.9 70 71.4
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.8e-23 115.2 71 69.0
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.5e-22 112.1 94 60.6
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.8e-20 105.1 70 65.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 1.6e-19 102.1 64 70.3
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 5.0e-18 97.1 66 69.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 5.0e-18 97.1 66 69.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 5.0e-18 97.1 66 69.7
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 6.6e-18 96.7 83 56.6
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 9.5e-17 92.8 99 50.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 9.8e-14 82.8 52 65.4
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 3.7e-13 80.9 99 48.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 8.6e-10 69.7 67 50.7
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 9.5e-09 66.2 64 50.0


User provided reference genes

Program Settings