Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.2e-214 749.6 372 100.0
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 9.0e-159 563.9 299 95.7
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.4e-113 412.5 307 70.4
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.3e-96 357.5 259 72.6
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.5e-92 344.0 345 57.4
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.2e-89 334.3 309 58.3
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.9e-88 328.9 295 63.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.9e-84 317.0 317 56.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.3e-80 304.3 316 55.1
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.1e-76 291.2 317 50.8
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.3e-76 289.3 251 59.4
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.6e-75 287.3 320 50.6
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 4.4e-73 279.3 228 61.0
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.1e-71 274.6 319 50.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 9.3e-71 271.6 307 50.5
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.1e-70 270.4 236 57.6
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 4.6e-70 269.2 318 49.4
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.3e-69 266.9 326 47.2
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.5e-68 264.2 320 48.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 7.3e-68 261.9 321 48.3
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 9.6e-68 261.5 324 47.2
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.6e-67 260.8 320 48.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.6e-67 260.8 320 48.1
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 8.1e-67 258.5 313 49.2
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.1e-66 258.1 314 47.1
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.1e-66 258.1 261 53.3
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.8e-66 257.3 315 49.8
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.4e-66 256.9 319 47.6
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.4e-66 256.9 322 47.5
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 3.1e-66 256.5 250 57.2
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 6.9e-66 255.4 306 46.4
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 9.0e-66 255.0 257 53.3
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 9.0e-66 255.0 327 46.8
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.6e-65 253.4 322 46.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.6e-65 253.4 330 46.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.4e-65 253.1 318 45.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.4e-65 253.1 259 50.2
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 3.4e-65 253.1 315 49.2
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 7.6e-65 251.9 325 46.5
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 7.6e-65 251.9 319 48.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 7.6e-65 251.9 318 47.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 9.9e-65 251.5 315 47.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.7e-64 250.8 321 47.7
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.7e-64 250.8 318 47.5
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.2e-64 250.4 313 47.0
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.9e-64 250.0 246 52.0
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.9e-64 250.0 321 47.4
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 3.8e-64 249.6 252 52.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 6.4e-64 248.8 315 46.0
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.4e-64 248.8 316 47.2
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.4e-63 246.9 228 54.8
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.2e-63 246.5 230 55.2
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.4e-63 245.7 319 46.4
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 7.1e-63 245.4 237 55.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 9.3e-63 245.0 257 52.5
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 9.3e-63 245.0 229 57.6
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 9.3e-63 245.0 318 45.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-62 244.6 244 53.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-62 244.6 244 53.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.1e-62 243.8 247 52.2
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 2.1e-62 243.8 235 55.7
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.7e-62 243.4 226 54.0
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 6.0e-62 242.3 229 54.6
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 6.0e-62 242.3 235 54.5
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 6.0e-62 242.3 313 44.7
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.0e-61 241.5 315 45.7
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.0e-61 241.5 311 45.3
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.3e-61 241.1 303 47.5
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.3e-61 240.4 315 46.3
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 2.3e-61 240.4 322 47.2
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.3e-61 240.4 306 45.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.0e-61 240.0 306 44.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.0e-61 240.0 310 46.5
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.9e-61 239.6 229 54.1
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.9e-61 239.6 323 45.2
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.9e-61 239.6 234 53.8
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.1e-61 239.2 353 43.9
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.7e-61 238.8 233 54.9
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 8.7e-61 238.4 311 46.0
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 8.7e-61 238.4 250 55.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.1e-60 238.0 316 45.6
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.5e-60 237.7 228 52.2
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 4.3e-60 236.1 321 43.9
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 4.3e-60 236.1 229 53.7
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.6e-60 235.7 327 45.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 5.6e-60 235.7 302 47.0
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-59 234.2 349 43.3
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-59 234.2 349 43.3
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.8e-59 233.4 310 44.2
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 4.8e-59 232.6 243 53.5
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 6.2e-59 232.3 299 46.5
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 6.2e-59 232.3 299 44.8
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.2e-57 228.0 310 45.8
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.0e-57 227.3 299 44.8
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.6e-57 226.9 319 43.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.4e-57 226.5 234 51.7
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 4.5e-57 226.1 238 51.3
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.5e-57 226.1 229 52.4
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 7.6e-57 225.3 331 41.7
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.7e-56 224.2 313 46.3
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.9e-56 223.4 307 43.3
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.1e-54 217.2 315 42.2
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.7e-54 216.9 323 40.6
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.7e-54 216.9 325 41.2
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 6.0e-54 215.7 309 42.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 6.0e-54 215.7 229 52.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 7.9e-54 215.3 308 42.9
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-53 214.5 325 40.9
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.8e-53 214.2 305 42.6
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.3e-53 213.8 321 41.7
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.0e-53 213.4 249 45.0
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 3.9e-53 213.0 321 41.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.9e-53 213.0 240 49.2
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 6.7e-53 212.2 229 52.4
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.9e-52 210.7 306 45.8
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.9e-52 210.7 240 48.8
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.9e-52 210.7 229 51.5
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.3e-52 209.9 308 41.9
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 7.4e-52 208.8 322 41.9
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-51 207.6 315 41.0
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.1e-51 207.2 318 40.6
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.1e-51 207.2 313 43.1
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.7e-51 206.5 322 41.9
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.7e-51 206.5 312 41.7
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.1e-50 204.9 311 42.1
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.4e-50 203.8 299 43.5
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.0e-49 200.7 277 45.1
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.6e-49 200.3 315 39.4
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 7.6e-49 198.7 173 57.2
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 4.9e-48 196.1 221 52.9
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 6.5e-48 195.7 313 40.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 6.5e-48 195.7 250 43.6
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 6.5e-48 195.7 250 43.6
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 8.4e-48 195.3 311 41.2
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.4e-47 194.5 306 41.2
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.4e-47 194.5 306 41.2
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.9e-47 194.1 327 40.1
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 9.3e-47 191.8 306 40.8
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.2e-46 191.4 312 40.7
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.1e-46 190.7 304 39.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.1e-46 190.7 142 72.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 5.1e-45 186.0 300 39.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.3e-43 179.1 310 36.5
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 6.3e-43 179.1 287 38.0
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.5e-39 167.2 269 37.2
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 9.3e-39 165.2 203 42.9
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-35 153.3 110 60.9
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.5e-33 147.9 288 34.7
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.0e-32 145.2 199 43.2
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.9e-32 143.7 308 35.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.1e-31 141.7 225 42.2
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.2e-30 138.3 176 45.5
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.1e-30 137.5 245 38.4
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.7e-28 129.4 222 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 2.2e-24 117.5 138 42.0
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 5.0e-24 116.3 172 41.3
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.1e-23 115.2 77 63.6
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 4.7e-22 109.8 102 50.0
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.0e-21 107.1 154 44.2
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.0e-21 107.1 118 48.3
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.8e-18 97.8 197 35.5
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 4.1e-18 96.7 137 43.1
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.0e-17 94.4 105 42.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 2.6e-17 94.0 273 27.5
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.5e-17 93.6 93 55.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.2e-15 86.7 111 38.7
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.2e-14 85.1 83 51.8
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.1e-14 84.3 83 50.6
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.7e-11 74.7 114 38.6
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.2e-11 74.3 135 33.3
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 3.5e-09 67.0 43 62.8
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 4.5e-09 66.6 55 50.9
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.7e-08 64.7 250 25.2
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 1.7e-08 64.7 56 48.2
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.2e-08 64.3 70 47.1
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 6.5e-08 62.8 108 41.7
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 8.5e-08 62.4 43 67.4
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.1e-07 62.0 47 61.7
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 3.2e-07 60.5 186 28.0
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 8.0e-06 55.8 49 49.0


User provided reference genes

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