Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.2e-145 520.4 374 100.0
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.2e-140 502.3 332 96.1
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.7e-123 445.3 339 87.9
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.0e-122 444.1 332 86.7
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 6.8e-114 414.8 332 81.6
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 7.5e-113 411.4 331 80.7
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.3e-112 410.6 348 78.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 3.7e-112 409.1 357 77.9
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.9e-112 408.7 335 81.2
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 6.4e-112 408.3 332 82.5
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.1e-111 407.5 338 81.4
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.4e-111 406.4 334 80.2
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 2.7e-110 402.9 331 74.9
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 4.6e-110 402.1 252 84.1
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.0e-109 401.0 332 80.4
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.1e-108 397.5 331 76.1
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.5e-108 397.1 331 75.2
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.9e-108 396.7 331 79.2
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 3.3e-108 396.0 332 80.7
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 7.3e-108 394.8 331 76.1
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.1e-107 393.3 333 76.9
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.8e-106 390.2 331 75.5
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.5e-105 387.1 331 75.2
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 2.6e-105 386.3 343 79.6
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 2.6e-105 386.3 343 79.6
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.6e-105 386.3 333 80.8
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.4e-105 385.6 332 79.5
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 2.9e-104 382.9 332 80.4
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 4.9e-104 382.1 334 76.6
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 4.9e-104 382.1 332 75.0
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 8.3e-104 381.3 331 71.0
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.4e-103 380.6 333 67.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 1.9e-103 380.2 250 82.0
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 9.2e-103 377.9 332 71.1
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.6e-102 377.1 338 74.0
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.7e-102 376.3 257 77.8
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.5e-102 375.9 332 65.1
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 4.6e-102 375.6 346 69.7
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.0e-102 375.2 332 71.1
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 6.0e-102 375.2 332 71.1
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 6.0e-102 375.2 332 72.0
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 6.0e-102 375.2 332 70.8
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 6.0e-102 375.2 332 72.0
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 7.8e-102 374.8 332 71.7
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.3e-101 373.2 332 71.4
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 3.0e-101 372.9 332 70.5
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 6.6e-101 371.7 332 69.9
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 6.6e-101 371.7 332 75.3
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 8.6e-101 371.3 332 68.7
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 4.3e-100 369.0 332 73.8
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-99 367.5 335 70.1
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 1.1e-98 364.4 332 73.8
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 3.1e-98 362.8 332 68.4
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.1e-98 362.8 331 63.7
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.2e-98 362.1 244 80.3
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.5e-97 360.5 332 76.8
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 3.4e-97 359.4 331 75.5
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.4e-97 359.0 253 75.9
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 4.4e-97 359.0 331 67.1
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 2.2e-96 356.7 331 74.0
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.2e-96 356.7 335 61.5
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 2.9e-96 356.3 331 67.4
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 4.9e-96 355.5 332 75.9
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 4.9e-96 355.5 331 65.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 4.9e-96 355.5 331 65.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 8.4e-96 354.8 330 62.4
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.1e-95 354.4 332 75.0
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.2e-95 352.4 255 72.9
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.1e-94 350.1 356 72.2
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 3.5e-94 349.4 335 69.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 7.8e-94 348.2 336 60.7
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 2.3e-93 346.7 333 72.7
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 2.3e-93 346.7 335 62.7
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 3.0e-93 346.3 251 77.3
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.9e-93 345.9 335 73.1
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 6.6e-93 345.1 323 76.8
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.1e-92 344.4 336 72.9
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.5e-92 343.2 334 61.1
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 5.6e-92 342.0 332 59.6
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.2e-91 340.9 331 63.1
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 3.6e-91 339.3 333 72.1
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.7e-91 339.0 332 69.0
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.1e-90 337.8 333 74.5
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 4.0e-90 335.9 333 67.3
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 2.0e-89 333.6 289 64.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 4.4e-89 332.4 218 81.7
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.8e-88 329.3 340 61.8
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 4.9e-88 328.9 216 84.3
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 6.4e-88 328.6 332 63.6
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.1e-87 327.8 253 71.5
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.4e-87 327.4 217 83.4
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.5e-84 317.4 231 78.8
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 6.2e-83 312.0 335 58.5
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 9.0e-82 308.1 255 71.0
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.0e-81 307.0 218 77.5
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 5.4e-79 298.9 347 67.4
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 5.4e-79 298.9 243 66.3
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 8.7e-77 291.6 403 56.3
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 8.7e-77 291.6 247 67.2
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 7.4e-76 288.5 343 53.1
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 9.6e-76 288.1 229 71.2
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.6e-75 287.3 243 65.8
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.8e-75 286.6 254 67.7
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.8e-75 286.6 357 61.9
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 6.9e-74 282.0 352 54.8
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.4e-71 274.2 191 80.6
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 4.2e-71 272.7 260 60.0
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 7.1e-71 271.9 249 63.9
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.2e-70 271.2 332 52.7
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.3e-69 267.7 339 56.0
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.8e-69 267.3 208 74.0
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.5e-68 264.2 219 73.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.6e-67 260.8 341 56.0
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 4.8e-67 259.2 335 50.4
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 1.8e-66 257.3 346 58.4
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.8e-66 257.3 339 61.1
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-65 254.6 262 59.9
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.2e-65 254.6 262 59.9
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 3.4e-65 253.1 346 56.1
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.2e-63 246.5 343 55.1
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 9.3e-63 245.0 265 58.5
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 9.3e-63 245.0 265 58.5
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.1e-62 243.8 265 58.5
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-56 224.6 258 55.8
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.4e-53 214.5 262 50.4
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.7e-51 206.5 217 69.6
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.4e-42 177.9 126 80.2
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.6e-41 173.7 101 90.1
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 3.8e-40 169.9 157 64.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.8e-35 153.7 221 50.7
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 5.2e-29 132.9 148 43.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.7e-27 127.9 151 46.4
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 8.3e-27 125.6 219 43.8
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 9.1e-26 122.1 132 46.2
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.8e-24 116.7 114 70.2
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.0e-21 108.6 121 46.3
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.8e-21 107.8 153 39.2
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 2.3e-21 107.5 121 81.8
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.8e-20 102.1 128 43.8
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.3e-19 101.7 130 40.8
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.5e-17 93.2 116 77.6
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.3e-16 91.7 115 53.0
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 3.3e-15 87.0 124 66.1
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 2.1e-14 84.3 113 51.3
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 1.8e-13 81.3 117 82.9
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 9.8e-12 75.5 35 91.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.3e-11 75.1 49 67.3
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.5e-09 66.6 36 83.3


User provided reference genes

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