Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029848 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 4.2e-110 401.4 201 100.0
CSS0044635 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 5.5e-94 347.8 203 85.2
CSS0041169 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 1.2e-85 320.1 201 85.6
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.2e-17 92.4 107 43.0
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.1e-15 85.5 113 37.2
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-14 84.0 93 45.2
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 2.5e-14 83.2 111 36.0
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 4.3e-14 82.4 111 36.0
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.3e-14 82.4 90 42.2
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.6e-14 82.0 113 36.3
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-13 80.9 98 42.9
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-13 80.9 98 42.9
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-13 80.5 110 35.5
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-13 80.5 112 38.4
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.6e-13 80.5 111 40.5
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.6e-13 80.5 111 40.5
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-13 80.1 112 36.6
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-13 79.7 102 38.2
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.8e-13 79.7 90 41.1
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 3.6e-13 79.3 111 40.5
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-13 79.0 113 35.4
Atru.chr8.1058 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-13 79.0 112 35.7
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-12 77.8 112 35.7
Lj2P1198T31 Lonicera japonica HOM05D039584 ORTHO05D012910 1.1e-12 77.8 83 42.2
Atru.chr2.2395 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-12 77.4 110 37.3
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-12 77.0 94 43.6
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-12 76.3 110 33.6
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.1e-12 76.3 47 63.8
Lj4P763T2 Lonicera japonica HOM05D039584 ORTHO05D012910 3.1e-12 76.3 80 43.8
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-12 75.9 110 34.5
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-12 75.9 110 34.5
CSS0014297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.0e-12 75.9 110 34.5
Lju682P1T12 Lonicera japonica HOM05D025174 ORTHO05D012910 1.5e-11 73.9 80 38.8
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-11 73.2 76 42.1
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-11 73.2 110 33.6
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-11 72.8 78 47.4
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 3.4e-11 72.8 110 34.5
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-11 72.8 110 33.6
Atru.chr12.1990 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-11 72.8 199 30.2
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-11 72.8 110 32.7
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-11 72.8 102 39.2
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-11 72.8 110 32.7
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-11 72.8 110 34.5
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-11 72.8 112 36.6
RcHm_v2.0_Chr1g0382551 Rosa chinensis HOM05D000003 ORTHO05D000004 3.4e-11 72.8 117 41.0
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-11 72.4 110 32.7
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-11 72.4 112 33.0
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-11 72.0 97 37.1
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-11 72.0 110 36.4
Atru.chr6.1028 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-11 71.2 102 34.3
Atru.chr6.1145 Acer truncatum HOM05D000003 ORTHO05D012910 9.9e-11 71.2 102 35.3
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-10 70.9 85 41.2
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 1.3e-10 70.9 110 34.5
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-10 70.5 112 34.8
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-10 70.1 75 42.7
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.2e-10 70.1 70 41.4
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 2.2e-10 70.1 110 36.4
Aqoxy12s031 Aquilegia oxysepala HOM05D000003 ORTHO05D012910 2.9e-10 69.7 110 35.5
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-10 69.7 90 37.8
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 3.8e-10 69.3 112 39.3
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-10 68.9 76 40.8
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-10 68.6 110 32.7
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 8.4e-10 68.2 116 32.8
Glyma.06G010150 Glycine max HOM05D000003 ORTHO05D000004 8.4e-10 68.2 110 32.7
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-09 67.8 111 36.0
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-09 67.8 110 30.9
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-09 67.8 111 35.1
Atru.chr2.2101 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-09 67.4 111 33.3
Actinidia07755 Actinidia chinensis HOM05D000003 ORTHO05D012910 1.4e-09 67.4 97 37.1
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 1.4e-09 67.4 102 33.3
Lj7P445T11 Lonicera japonica HOM05D025174 ORTHO05D012910 1.4e-09 67.4 88 35.2
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 1.9e-09 67.0 93 37.6
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 1.9e-09 67.0 112 38.4
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.4e-09 66.6 135 33.3
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 2.4e-09 66.6 110 31.8
Atru.chr5.2550 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-09 66.2 76 40.8
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 3.2e-09 66.2 110 31.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-09 65.9 112 32.1
Lj2g0002183 Lotus japonicus HOM05D010643 ORTHO05D012910 7.1e-09 65.1 114 28.9
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-08 64.3 102 34.3
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-08 64.3 75 40.0
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-08 63.2 111 31.5
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 2.7e-08 63.2 121 31.4
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 3.5e-08 62.8 78 38.5
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 3.5e-08 62.8 102 35.3
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 3.5e-08 62.8 110 32.7
FvH4_3g30492 Fragaria vesca HOM05D000003 ORTHO05D000022 6.0e-08 62.0 86 38.4
Lj8P259T33 Lonicera japonica HOM05D064272 ORTHO05D012910 6.0e-08 62.0 109 30.3
Atru.chr4.1025 Acer truncatum HOM05D000003 ORTHO05D000004 7.9e-08 61.6 110 30.0
CANSAT54G3006 Cannabis sativa HOM05D000003 ORTHO05D000167 7.9e-08 61.6 124 29.0
Psat1g083000 Pisum sativum HOM05D000003 ORTHO05D015733 1.0e-07 61.2 111 30.6
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-07 60.8 110 33.6
Atru.ctg664.6 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-07 60.8 58 41.4
AUR62015281 Chenopodium quinoa HOM05D000003 ORTHO05D000004 1.8e-07 60.5 137 30.7
COL.COLO4_08472 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.8e-07 60.5 110 30.0
QL06p036576 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-07 60.5 120 30.0
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-07 60.1 124 29.8
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 2.3e-07 60.1 83 37.3
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 2.3e-07 60.1 73 42.5
QL09p017510 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-07 60.1 110 30.9
CANSAT80G0272 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 59.7 82 31.7
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.0e-07 59.7 133 31.6
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-07 59.7 119 30.3
RcHm_v2.0_Chr1g0321741 Rosa chinensis HOM05D000003 ORTHO05D012910 3.0e-07 59.7 45 53.3
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.0e-07 59.7 110 32.7
Atru.chr11.1461 Acer truncatum HOM05D000003 ORTHO05D000022 3.9e-07 59.3 110 27.3
Lju897C2T1 Lonicera japonica HOM05D000003 ORTHO05D000126 3.9e-07 59.3 156 26.9
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 5.1e-07 58.9 102 33.3
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 5.1e-07 58.9 53 43.4
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-07 58.9 45 48.9
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-07 58.9 112 30.4
CANSAT21G0771 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-07 58.9 180 23.9
QL07p036110 Quercus lobata HOM05D001729 ORTHO05D001155 5.1e-07 58.9 118 32.2
Lj2g0018095 Lotus japonicus HOM05D000003 ORTHO05D034584 6.7e-07 58.5 121 28.1
RcHm_v2.0_Chr1g0384551 Rosa chinensis HOM05D000003 ORTHO05D000004 8.7e-07 58.2 76 39.5
QL04p070512 Quercus lobata HOM05D008417 ORTHO05D010741 1.1e-06 57.8 114 28.1
Lj1g0008461 Lotus japonicus HOM05D010643 ORTHO05D011148 1.5e-06 57.4 114 25.4
Lj5g0000021 Lotus japonicus HOM05D010643 ORTHO05D011148 1.5e-06 57.4 114 25.4
Lj6g0017573 Lotus japonicus HOM05D000003 ORTHO05D000004 1.5e-06 57.4 77 39.0
PSO591G0286 Papaver somniferum HOM05D000003 ORTHO05D000004 1.5e-06 57.4 105 33.3
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 1.5e-06 57.4 123 27.6
CiPaw.15G073500 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.9e-06 57.0 123 30.1
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 56.6 51 45.1
COL.COLO4_21884 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.5e-06 56.6 110 30.0
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 2.5e-06 56.6 161 26.1
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 3.3e-06 56.2 125 31.2
QL05p047317 Quercus lobata HOM05D000003 ORTHO05D000004 3.3e-06 56.2 124 25.0
QL06p003742 Quercus lobata HOM05D008417 ORTHO05D000004 3.3e-06 56.2 122 30.3
Aqoxy5G02603 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.3e-06 55.8 126 26.2
BcaC07g37243 Brassica carinata HOM05D000003 ORTHO05D000925 4.3e-06 55.8 162 23.5
Lj4P628T36 Lonicera japonica HOM05D000003 ORTHO05D000004 4.3e-06 55.8 111 24.3
Nitab4.5_0005020g0020 Nicotiana tabacum HOM05D009389 ORTHO05D012243 4.3e-06 55.8 101 28.7
QL93p2025_0060 Quercus lobata HOM05D000003 ORTHO05D000004 4.3e-06 55.8 111 27.0
CANSAT25G2587 Cannabis sativa HOM05D000003 ORTHO05D000167 5.6e-06 55.5 91 28.6
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 5.6e-06 55.5 122 32.0
CANSAT01G2039 Cannabis sativa HOM05D000003 ORTHO05D000167 7.4e-06 55.1 82 37.8
COL.COLO4_10453 Corchorus olitorius HOM05D000003 ORTHO05D000022 7.4e-06 55.1 110 28.2
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 7.4e-06 55.1 101 36.6
Nitab4.5_0002091g0100 Nicotiana tabacum HOM05D009389 ORTHO05D012243 7.4e-06 55.1 100 28.0
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 7.4e-06 55.1 88 36.4
SGA_v2.0_scaffold255G45431 Striga asiatica HOM05D021982 ORTHO05D012910 7.4e-06 55.1 74 36.5
Atru.chr1.1866 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-06 54.7 48 43.8
Atru.chr6.783 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-06 54.7 85 37.6
CANSAT56G0354 Cannabis sativa HOM05D000003 ORTHO05D000167 9.6e-06 54.7 114 31.6
COL.COLO4_10353 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.6e-06 54.7 56 41.1
PSO339G0911 Papaver somniferum HOM05D000003 ORTHO05D000022 9.6e-06 54.7 84 39.3
Sed0016145 Sechium edule HOM05D000003 ORTHO05D000004 9.6e-06 54.7 85 36.5


User provided reference genes

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