Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029823 Camellia sinensis var. sinensis HOM05D005704 ORTHO05D112041 3.7e-51 204.5 99 100.0
CSS0006849 Camellia sinensis var. sinensis HOM05D005704 ORTHO05D006897 1.6e-09 66.2 37 89.2
DCAR_025148 Daucus carota HOM05D005704 ORTHO05D006897 3.5e-09 65.1 38 86.8
CANSAT56G4288 Cannabis sativa HOM05D005704 ORTHO05D006897 1.0e-08 63.5 36 88.9
Hma1.2p1_0001F.1_g001780 Hydrangea macrophylla HOM05D005704 ORTHO05D006897 1.0e-08 63.5 37 86.5
Lj7A517T50 Lonicera japonica HOM05D005704 ORTHO05D006897 1.0e-08 63.5 37 86.5
Aqoxy7G00396 Aquilegia oxysepala HOM05D005704 ORTHO05D006897 1.7e-08 62.8 37 83.8
Thecc.01G366000 Theobroma cacao HOM05D005704 ORTHO05D006897 2.3e-08 62.4 36 86.1
HanXRQChr13g0426231 Helianthus annuus HOM05D005704 ORTHO05D006897 3.0e-08 62.0 37 81.1
vmacro20960 Vaccinium macrocarpon HOM05D005704 ORTHO05D006897 3.0e-08 62.0 37 83.8
Sed0002697 Sechium edule HOM05D005704 ORTHO05D006897 5.1e-08 61.2 36 86.1
GSVIVG01027497001 Vitis vinifera HOM05D005704 ORTHO05D006897 5.1e-08 61.2 36 88.9
unitig_0.g2766 Utricularia gibba HOM05D005704 ORTHO05D006897 6.6e-08 60.8 36 83.3
ECA240G1317 Erigeron canadensis HOM05D005704 ORTHO05D006897 8.6e-08 60.5 37 81.1
Dinv43773 Davidia involucrata HOM05D005704 ORTHO05D006897 1.1e-07 60.1 37 81.1
MD01G1049200 Malus domestica HOM05D005704 ORTHO05D006897 1.5e-07 59.7 37 83.8
Hund27313 Selenicereus undatus HOM05D005704 ORTHO05D006897 1.5e-07 59.7 36 86.1
SGA_v2.0_scaffold11G05652 Striga asiatica HOM05D005704 ORTHO05D006897 2.5e-07 58.9 36 80.6
Actinidia12718 Actinidia chinensis HOM05D005704 ORTHO05D006897 3.3e-07 58.5 36 77.8
Manes.05G038700 Manihot esculenta HOM05D005704 ORTHO05D006897 3.3e-07 58.5 36 83.3
Prupe.2G157700 Prunus persica HOM05D005704 ORTHO05D006897 3.3e-07 58.5 37 81.1
Nitab4.5_0005423g0010 Nicotiana tabacum HOM05D005704 ORTHO05D006897 4.3e-07 58.2 37 75.7
Nitab4.5_0006421g0070 Nicotiana tabacum HOM05D005704 ORTHO05D006897 4.3e-07 58.2 37 75.7
Rhsim01G0153000 Rhododendron simsii HOM05D005704 ORTHO05D006897 4.3e-07 58.2 37 75.7
SalBow5G4035 Salvia bowleyana HOM05D005704 ORTHO05D006897 4.3e-07 58.2 36 80.6
Solyc01g091580.3 Solanum lycopersicum HOM05D005704 ORTHO05D006897 4.3e-07 58.2 37 75.7
Sopen01g037350 Solanum pennellii HOM05D005704 ORTHO05D006897 4.3e-07 58.2 37 75.7
PGSC0003DMG400027773 Solanum tuberosum HOM05D005704 ORTHO05D006897 4.3e-07 58.2 37 75.7
ClCG05G001760 Citrullus lanatus HOM05D005704 ORTHO05D006897 5.6e-07 57.8 36 83.3
COL.COLO4_12606 Corchorus olitorius HOM05D005704 ORTHO05D006897 5.6e-07 57.8 36 80.6
FvH4_7g13420 Fragaria vesca HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN01G0806 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN03G2921 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN06G1057 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN06G2859 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN10G2668 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN10G4172 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
FAN23G0404 Fragaria x ananassa HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
Nn6g34198 Nelumbo nucifera HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
RcHm_v2.0_Chr1g0352781 Rosa chinensis HOM05D005704 ORTHO05D006897 5.6e-07 57.8 37 81.1
MSTRG.4872 Avicennia marina HOM05D005704 ORTHO05D006897 9.5e-07 57.0 37 73.0
CAN.G170.14 Capsicum annuum HOM05D005704 ORTHO05D006897 9.5e-07 57.0 37 73.0
Ah.05g176310 Amaranthus hybridus HOM05D005704 ORTHO05D006897 1.2e-06 56.6 37 78.4
Cpa.g.sc18.211 Carica papaya HOM05D005704 ORTHO05D006897 1.2e-06 56.6 37 78.4
Cc00_g12130 Coffea canephora HOM05D005704 ORTHO05D006897 1.2e-06 56.6 36 75.0
Gohir.A11G086300 Gossypium hirsutum HOM05D005704 ORTHO05D006897 1.2e-06 56.6 36 80.6
Oeu014688.2 Olea europaea HOM05D005704 ORTHO05D006897 1.2e-06 56.6 36 77.8
Potri.014G078800 Populus trichocarpa HOM05D005704 ORTHO05D006897 1.2e-06 56.6 36 80.6
TWI59G0155 Tripterygium wilfordii HOM05D005704 ORTHO05D006897 1.2e-06 56.6 36 80.6
Atru.chr5.425 Acer truncatum HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 77.8
Ciclev10020663m.g Citrus clementina HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 80.6
MELO3C006136.2 Cucumis melo HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 80.6
CsaV3_3G009150 Cucumis sativus L. HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 80.6
QL08p050136 Quercus lobata HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 77.8
Sabra14G0057000 Salix brachista HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 80.6
SalBow5G2510 Salvia bowleyana HOM05D005704 ORTHO05D006897 1.6e-06 56.2 36 77.8
CiPaw.02G026700 Carya illinoinensis HOM05D005704 ORTHO05D006897 2.1e-06 55.8 37 75.7
EL10Ac1g00515 Beta vulgaris HOM05D005704 ORTHO05D006897 2.8e-06 55.5 37 70.3
Duzib138G1914 Durio zibethinus HOM05D005704 ORTHO05D006897 2.8e-06 55.5 36 77.8
Gohir.D11G090500 Gossypium hirsutum HOM05D005704 ORTHO05D006897 2.8e-06 55.5 36 80.6
Medtr8g032340 Medicago truncatula HOM05D005704 ORTHO05D006897 2.8e-06 55.5 37 75.7
Psat4g153600 Pisum sativum HOM05D005704 ORTHO05D006897 2.8e-06 55.5 37 75.7
TPR.G9825 Trifolium pratense HOM05D005704 ORTHO05D006897 2.8e-06 55.5 37 75.7
Haze_15205 Corylus avellana HOM05D005704 ORTHO05D006897 3.6e-06 55.1 37 75.7
Manes.01G260600 Manihot esculenta HOM05D005704 ORTHO05D006897 3.6e-06 55.1 36 80.6
PSO782G3686 Papaver somniferum HOM05D005704 ORTHO05D006897 3.6e-06 55.1 75 45.3
TAR374G0147 Trochodendron aralioides HOM05D005704 ORTHO05D006897 3.6e-06 55.1 37 75.7
Prupe.2G158000 Prunus persica HOM05D005704 ORTHO05D006897 4.7e-06 54.7 37 75.7
CDE02G1367 Ceratophyllum demersum HOM05D005704 ORTHO05D006897 6.2e-06 54.3 37 73.0
Gorai.007G096500 Gossypium raimondii HOM05D005704 ORTHO05D006897 6.2e-06 54.3 36 77.8
Aa31LG1G27230 Aethionema arabicum HOM05D005704 ORTHO05D006897 8.1e-06 53.9 41 68.3
PGR042G1999 Punica granatum HOM05D005704 ORTHO05D006897 8.1e-06 53.9 37 70.3


User provided reference genes

Program Settings