Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029812 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 4.5e-58 227.6 108 100.0
CSS0020692 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.6e-50 201.8 108 91.7
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 3.1e-19 98.6 74 60.8
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 1.7e-17 92.8 57 77.2
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 5.0e-17 91.3 57 75.4
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 8.5e-17 90.5 57 73.7
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 8.5e-17 90.5 57 73.7
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.1e-16 90.1 58 72.4
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.1e-16 90.1 58 72.4
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 1.9e-16 89.4 57 73.7
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.9e-16 89.4 57 71.9
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.9e-16 89.4 57 71.9
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 1.9e-16 89.4 57 68.4
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 1.9e-16 89.4 57 68.4
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.5e-16 89.0 57 73.7
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 2.5e-16 89.0 58 72.4
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 2.5e-16 89.0 58 72.4
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 3.2e-16 88.6 57 71.9
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.2e-16 88.2 57 70.2
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 4.2e-16 88.2 57 70.2
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 4.2e-16 88.2 57 70.2
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 4.2e-16 88.2 57 71.9
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 5.5e-16 87.8 57 70.2
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 7.2e-16 87.4 57 71.9
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 7.2e-16 87.4 57 70.2
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 7.2e-16 87.4 57 73.7
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 7.2e-16 87.4 57 66.7
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 9.4e-16 87.0 57 68.4
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 9.4e-16 87.0 57 68.4
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 9.4e-16 87.0 57 68.4
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 1.2e-15 86.7 57 68.4
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 1.2e-15 86.7 57 68.4
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.2e-15 86.7 57 70.2
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 1.6e-15 86.3 57 71.9
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 1.6e-15 86.3 56 67.9
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 1.6e-15 86.3 57 68.4
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 2.1e-15 85.9 57 68.4
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 2.1e-15 85.9 55 70.9
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 2.7e-15 85.5 57 66.7
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 2.7e-15 85.5 57 68.4
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 3.6e-15 85.1 57 64.9
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 3.6e-15 85.1 57 68.4
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 3.6e-15 85.1 57 68.4
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 3.6e-15 85.1 57 66.7
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 3.6e-15 85.1 57 68.4
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 3.6e-15 85.1 57 73.7
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 4.7e-15 84.7 57 66.7
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 4.7e-15 84.7 57 70.2
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 4.7e-15 84.7 57 70.2
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 4.7e-15 84.7 59 66.1
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 4.7e-15 84.7 57 66.7
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 4.7e-15 84.7 57 70.2
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 6.1e-15 84.3 57 66.7
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 6.1e-15 84.3 57 68.4
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 6.1e-15 84.3 53 64.2
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 8.0e-15 84.0 57 70.2
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 8.0e-15 84.0 57 70.2
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 8.0e-15 84.0 57 70.2
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 8.0e-15 84.0 56 67.9
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 1.0e-14 83.6 57 70.2
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 2.3e-14 82.4 57 66.7
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 2.3e-14 82.4 57 71.9
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 2.3e-14 82.4 57 63.2
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 2.3e-14 82.4 57 68.4
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 3.0e-14 82.0 57 71.9
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 3.9e-14 81.6 61 60.7
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 3.9e-14 81.6 57 64.9
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 3.9e-14 81.6 57 68.4
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 5.2e-14 81.3 57 68.4
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.1e-13 80.1 58 67.2
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 1.1e-13 80.1 57 64.9
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 2.6e-13 79.0 54 64.8
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 2.6e-13 79.0 57 64.9
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 2.6e-13 79.0 57 66.7
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 2.6e-13 79.0 57 63.2
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 3.3e-13 78.6 58 65.5
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 4.4e-13 78.2 57 64.9
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 4.4e-13 78.2 57 57.9
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 4.4e-13 78.2 81 49.4
Zm00001eb426420 Zea mays HOM05D005405 ORTHO05D006333 5.7e-13 77.8 54 63.0
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 7.4e-13 77.4 57 66.7
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 7.4e-13 77.4 57 63.2
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 1.3e-12 76.6 54 70.4
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-12 76.6 57 57.9
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 2.8e-12 75.5 57 66.7
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 2.8e-12 75.5 57 59.6
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 2.8e-12 75.5 59 59.3
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 3.7e-12 75.1 57 61.4
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 3.7e-12 75.1 57 66.7
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.8e-12 74.7 57 63.2
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 4.8e-12 74.7 57 59.6
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 6.3e-12 74.3 57 59.6
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 8.2e-12 73.9 57 59.6
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 8.2e-12 73.9 57 59.6
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 8.2e-12 73.9 53 67.9
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 8.2e-12 73.9 57 63.2
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.1e-11 73.6 57 63.2
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 1.1e-11 73.6 57 59.6
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 1.8e-11 72.8 57 59.6
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 2.4e-11 72.4 59 62.7
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 3.1e-11 72.0 57 52.6
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 5.3e-11 71.2 57 61.4
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 7.0e-11 70.9 59 59.3
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 9.1e-11 70.5 57 59.6
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 1.2e-10 70.1 53 64.2
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 5.9e-10 67.8 57 57.9
CDE02G4244 Ceratophyllum demersum HOM05D005405 ORTHO05D006333 1.3e-09 66.6 57 61.4
Zm00001eb157090 Zea mays HOM05D029717 ORTHO05D006333 2.2e-09 65.9 66 51.5
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 2.9e-09 65.5 57 61.4
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 8.5e-09 63.9 36 80.6
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 2.5e-08 62.4 36 77.8
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 3.2e-08 62.0 58 50.0
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 4.2e-08 61.6 36 75.0
SEGI_12739 Sequoiadendron giganteum HOM05D005405 ORTHO05D006333 5.5e-08 61.2 57 54.4
Pp3c2_17560 Physcomitrium patens HOM05D005405 ORTHO05D006333 9.4e-08 60.5 57 50.9
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 1.2e-07 60.1 36 72.2
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 6.1e-07 57.8 36 72.2
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 3.0e-06 55.5 36 66.7


User provided reference genes

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