Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.3e-64 248.8 135 100.0
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 8.6e-59 230.3 135 94.8
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 8.6e-59 230.3 135 94.8
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.0e-51 206.8 135 86.7
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.9e-50 202.6 134 84.3
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 7.3e-50 200.7 134 82.1
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 1.6e-49 199.5 134 82.1
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 2.1e-49 199.1 134 82.8
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 4.7e-49 198.0 134 82.1
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 1.4e-48 196.4 134 81.3
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 1.8e-48 196.1 135 80.0
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 2.3e-48 195.7 134 80.6
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 3.1e-48 195.3 135 80.7
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 3.1e-48 195.3 133 81.2
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 4.0e-48 194.9 134 80.6
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 8.9e-48 193.7 134 79.9
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 1.2e-47 193.4 134 79.1
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 1.2e-47 193.4 134 79.9
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 1.5e-47 193.0 135 77.8
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 2.0e-47 192.6 133 80.5
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 4.4e-47 191.4 134 78.4
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 4.4e-47 191.4 135 78.5
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 4.4e-47 191.4 134 78.4
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 4.4e-47 191.4 135 78.5
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 4.4e-47 191.4 132 80.3
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 4.4e-47 191.4 132 80.3
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 7.5e-47 190.7 134 78.4
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 9.8e-47 190.3 135 77.8
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.3e-46 189.9 134 79.1
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.3e-46 189.9 134 79.1
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 1.3e-46 189.9 134 77.6
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 1.7e-46 189.5 134 78.4
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 1.7e-46 189.5 135 77.8
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 1.7e-46 189.5 134 80.6
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 2.2e-46 189.1 134 79.1
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 3.7e-46 188.3 134 78.4
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 3.7e-46 188.3 134 78.4
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 4.9e-46 188.0 135 77.8
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 4.9e-46 188.0 134 77.6
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 4.9e-46 188.0 135 78.5
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 4.9e-46 188.0 134 76.1
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 6.4e-46 187.6 134 78.4
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 8.3e-46 187.2 134 77.6
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 1.1e-45 186.8 135 77.8
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 1.4e-45 186.4 134 76.9
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 1.4e-45 186.4 134 77.6
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 1.9e-45 186.0 137 76.6
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 4.1e-45 184.9 133 75.2
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 1.6e-44 183.0 134 75.4
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 1.6e-44 183.0 134 76.1
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 1.6e-44 183.0 132 75.8
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 2.1e-44 182.6 135 74.8
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 2.1e-44 182.6 135 74.8
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 4.6e-44 181.4 128 77.3
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 6.0e-44 181.0 135 75.6
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 6.0e-44 181.0 134 75.4
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 7.8e-44 180.6 131 76.3
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.0e-43 180.3 133 74.4
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 2.3e-43 179.1 134 74.6
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 3.0e-43 178.7 134 74.6
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 3.0e-43 178.7 134 73.9
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 5.1e-43 177.9 134 72.4
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 6.6e-43 177.6 132 72.7
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 6.6e-43 177.6 135 73.3
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 8.6e-43 177.2 134 72.4
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 1.1e-42 176.8 134 70.1
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 1.9e-42 176.0 134 71.6
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 1.9e-42 176.0 135 76.3
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 3.3e-42 175.3 134 73.1
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 5.6e-42 174.5 129 74.4
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 1.2e-41 173.3 119 82.4
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 1.6e-41 172.9 135 73.3
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 1.6e-41 172.9 135 70.4
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 2.1e-41 172.6 134 70.9
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 2.1e-41 172.6 133 73.7
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 2.1e-41 172.6 136 72.8
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 2.8e-41 172.2 135 73.3
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 6.2e-41 171.0 134 69.4
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 6.2e-41 171.0 134 70.1
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 8.1e-41 170.6 134 69.4
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 8.1e-41 170.6 126 77.8
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 1.4e-40 169.9 130 76.2
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 1.4e-40 169.9 122 77.9
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 3.1e-40 168.7 135 68.9
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 8.9e-40 167.2 135 68.9
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 1.2e-39 166.8 129 72.1
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 7.6e-39 164.1 135 66.7
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 2.9e-38 162.2 178 56.7
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.4e-37 159.8 92 93.5
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 3.2e-37 158.7 143 64.3
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 3.2e-37 158.7 135 68.1
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 5.4e-37 157.9 135 67.4
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 5.4e-37 157.9 135 67.4
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 5.4e-37 157.9 110 81.8
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 7.1e-37 157.5 127 69.3
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 4.6e-36 154.8 192 53.6
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 9.6e-34 147.1 96 81.2
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 2.1e-33 146.0 122 68.9
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 1.5e-31 139.8 93 81.7
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 1.5e-31 139.8 134 56.7
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 2.0e-31 139.4 134 56.7
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 9.9e-31 137.1 107 74.8
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 1.1e-29 133.7 105 71.4
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 4.2e-29 131.7 92 77.2
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 1.6e-28 129.8 110 65.5
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 7.3e-26 120.9 93 72.0
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 3.6e-25 118.6 96 69.8
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 1.1e-24 117.1 126 53.2
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 2.4e-24 115.9 97 68.0
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 1.5e-23 113.2 72 80.6
SalBow3G3584 Salvia bowleyana HOM05D006291 ORTHO05D007669 1.7e-22 109.8 112 58.0
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 6.4e-22 107.8 66 89.4
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 1.0e-19 100.5 64 75.0
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 1.3e-19 100.1 61 83.6
AagrBONN_evm.TU.Sc2ySwM_362.1895 Anthoceros agrestis HOM05D006291 ORTHO05D007669 1.8e-19 99.8 105 50.5
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 3.0e-19 99.0 61 80.3
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 3.3e-18 95.5 61 78.7
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 1.2e-15 87.0 61 70.5
BcaB08g35517 Brassica carinata HOM05D006291 ORTHO05D007669 3.2e-13 79.0 70 64.3
BolC3t14281H Brassica oleracea HOM05D006291 ORTHO05D007669 1.2e-12 77.0 71 63.4
Cpa.g.sc91.61 Carica papaya HOM05D006291 ORTHO05D007669 6.0e-12 74.7 61 72.1
CBR_g16047 Chara braunii HOM05D006291 ORTHO05D007669 4.8e-09 65.1 62 51.6
PRCOL_00006384 Prasinoderma coloniale HOM05D006291 ORTHO05D007669 1.4e-08 63.5 123 32.5
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 2.0e-07 59.7 53 58.5
Haze_19088 Corylus avellana HOM05D000287 ORTHO05D000319 1.0e-06 57.4 37 75.7


User provided reference genes

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