Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.9e-183 645.6 306 100.0
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 5.1e-168 594.3 308 92.9
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 1.5e-143 513.1 308 79.5
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 7.5e-143 510.8 310 79.0
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 5.3e-141 504.6 317 76.7
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.2e-140 503.4 325 77.8
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 4.4e-127 458.4 315 71.1
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 7.5e-127 457.6 312 72.8
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 1.7e-123 446.4 310 70.3
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.4e-120 436.8 312 69.9
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.8e-120 436.4 312 69.9
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 4.0e-120 435.3 312 69.6
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 4.0e-120 435.3 325 68.6
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 5.2e-120 434.9 312 69.6
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 2.6e-119 432.6 270 77.0
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.4e-119 432.2 312 69.6
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 4.4e-119 431.8 314 65.9
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 5.8e-119 431.4 312 69.2
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 7.5e-119 431.0 324 66.4
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 9.8e-119 430.6 319 65.2
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 3.7e-118 428.7 306 68.0
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 6.4e-118 427.9 314 67.8
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 1.4e-117 426.8 315 67.0
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 2.0e-116 422.9 315 65.7
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 2.0e-116 422.9 318 66.7
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.0e-116 422.9 313 66.5
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.0e-115 420.6 316 66.1
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 1.3e-115 420.2 322 64.0
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.7e-115 419.9 313 66.5
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.7e-115 419.9 312 67.3
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 2.5e-114 416.0 328 61.6
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 2.5e-114 416.0 312 66.0
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 5.6e-114 414.8 318 65.4
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 7.3e-114 414.5 311 65.9
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.8e-113 412.5 311 66.6
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 4.7e-113 411.8 314 69.1
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 8.0e-113 411.0 308 64.0
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 3.1e-112 409.1 310 68.1
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 5.2e-112 408.3 313 63.6
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.5e-111 406.8 318 65.1
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 2.0e-111 406.4 317 65.0
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 4.4e-111 405.2 310 63.5
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 4.4e-111 405.2 313 67.4
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 7.5e-111 404.4 314 64.3
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 9.8e-111 404.1 304 66.1
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 9.8e-111 404.1 310 67.7
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.2e-110 402.9 331 62.5
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.2e-110 402.9 312 65.1
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 3.7e-110 402.1 329 61.4
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 4.9e-110 401.7 313 64.5
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 8.3e-110 401.0 316 63.0
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.1e-109 400.6 319 62.4
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 5.4e-109 398.3 322 63.7
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 9.2e-109 397.5 312 64.1
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.2e-108 397.1 322 62.1
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 2.7e-108 396.0 315 64.8
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 6.0e-108 394.8 313 65.2
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.9e-107 392.1 314 63.1
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 8.6e-107 391.0 321 61.1
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 2.1e-105 386.3 313 61.3
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 1.8e-104 383.3 311 60.5
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 2.3e-104 382.9 313 62.3
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 3.1e-104 382.5 319 61.8
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 6.8e-104 381.3 322 61.2
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 1.7e-102 376.7 313 61.7
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 4.9e-102 375.2 318 59.4
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 1.1e-101 374.0 329 59.3
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 1.9e-101 373.2 323 58.8
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 4.6e-100 368.6 326 58.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-99 367.1 303 59.7
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 5.1e-99 365.2 310 58.7
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.5e-98 363.6 303 59.1
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 2.5e-98 362.8 324 57.4
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 2.1e-97 359.8 320 58.8
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 8.1e-97 357.8 303 58.7
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.1e-96 357.5 318 58.8
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 1.2e-95 354.0 325 55.7
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.5e-95 353.6 318 59.7
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 4.4e-95 352.1 342 56.7
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.2e-94 349.7 310 58.1
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.8e-94 349.0 343 55.7
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 8.4e-94 347.8 275 67.3
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 5.4e-93 345.1 288 59.4
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 3.3e-90 335.9 344 53.8
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 2.8e-89 332.8 306 57.5
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 3.6e-89 332.4 298 57.7
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.4e-88 329.7 307 56.7
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 4.0e-88 328.9 310 54.8
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 1.5e-87 327.0 412 44.4
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 4.4e-87 325.5 306 55.2
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.7e-86 323.6 311 53.7
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.6e-84 317.0 369 49.3
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 2.7e-84 316.2 385 48.1
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 4.6e-84 315.5 386 47.9
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 3.9e-83 312.4 266 60.9
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 5.1e-83 312.0 309 53.1
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 2.5e-82 309.7 376 47.6
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 2.8e-81 306.2 306 51.0
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 4.5e-79 298.9 393 45.0
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 7.6e-79 298.1 306 50.7
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 2.4e-77 293.1 308 52.3
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 9.3e-77 291.2 306 50.7
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 2.1e-76 290.0 306 51.6
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 4.6e-76 288.9 311 49.2
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 3.0e-75 286.2 269 56.5
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 3.0e-75 286.2 312 50.3
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 7.4e-74 281.6 311 49.2
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 7.4e-74 281.6 311 49.2
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 6.2e-65 251.9 303 47.2
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 5.5e-61 238.8 385 38.2
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 1.6e-60 237.3 310 44.5
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 3.5e-60 236.1 155 72.9
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 7.9e-60 235.0 356 38.5
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 2.3e-59 233.4 477 33.5
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 2.3e-59 233.4 335 40.6
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.1e-58 231.1 221 59.7
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 1.5e-58 230.7 239 52.3
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.6e-57 227.3 308 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 5.3e-56 222.2 406 33.7
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 6.9e-56 221.9 306 41.2
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 4.5e-55 219.2 308 41.2
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.7e-54 217.2 303 41.6
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 3.8e-54 216.1 210 59.0
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.8e-51 207.2 403 33.5
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 1.7e-49 200.7 311 37.3
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 3.4e-47 193.0 304 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 2.5e-45 186.8 398 31.4
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 7.2e-45 185.3 190 52.1
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.8e-41 173.3 125 62.4
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.8e-41 173.3 125 62.4
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 1.0e-38 164.9 98 74.5
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 2.3e-27 127.1 165 42.4
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.5e-26 124.4 162 43.8
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 5.9e-23 112.5 118 50.0
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.7e-22 110.9 246 32.9
Atru.chr8.389 Acer truncatum HOM05D002394 ORTHO05D002508 1.0e-06 58.5 74 36.5


User provided reference genes

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