Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 0.0e+00 1115.5 601 100.0
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.5e-171 607.1 640 60.6
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 3.4e-147 526.2 626 56.4
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 6.4e-122 442.2 602 51.8
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 1.4e-121 441.0 786 42.5
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.9e-102 377.5 501 50.5
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.4e-100 371.3 654 41.9
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 3.7e-93 346.7 670 43.6
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 5.3e-92 342.8 657 42.2
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.0e-91 340.9 732 37.7
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 7.1e-89 332.4 525 42.5
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 7.1e-89 332.4 700 39.4
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 2.5e-86 323.9 567 46.2
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 2.4e-84 317.4 640 41.6
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 5.0e-82 309.7 705 38.0
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 4.2e-81 306.6 642 39.9
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.2e-80 305.1 598 40.5
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.8e-79 301.2 616 41.6
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.0e-79 300.4 640 39.8
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.0e-79 300.4 644 39.3
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.5e-78 297.4 677 40.0
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 9.7e-78 295.4 453 47.5
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 8.2e-77 292.4 656 39.6
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 5.3e-76 289.7 562 43.8
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 4.5e-75 286.6 602 38.7
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 5.9e-75 286.2 644 39.9
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 2.9e-74 283.9 451 48.8
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 8.5e-74 282.3 551 43.2
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.9e-73 281.2 468 44.0
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 7.2e-73 279.3 660 39.8
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.2e-72 278.5 703 36.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.2e-72 278.5 595 41.3
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 3.6e-72 276.9 603 38.6
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 4.7e-72 276.6 597 42.0
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.8e-71 272.3 637 35.5
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 9.7e-70 268.9 637 38.1
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.1e-68 263.8 665 36.8
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 9.1e-68 262.3 637 37.0
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 7.7e-67 259.2 648 38.6
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.3e-66 258.5 622 38.3
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.0e-66 256.5 637 36.7
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 5.0e-66 256.5 652 35.4
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 6.5e-66 256.1 601 37.1
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.4e-65 255.0 620 38.9
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.4e-65 255.0 637 39.1
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 3.2e-65 253.8 585 36.4
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.2e-65 253.8 602 36.9
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 2.7e-64 250.8 430 40.2
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.6e-64 250.4 601 38.3
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 3.6e-64 250.4 618 35.8
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 6.1e-64 249.6 593 37.8
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.0e-64 249.2 655 35.6
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 8.0e-64 249.2 641 37.1
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.0e-64 249.2 602 37.7
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 8.0e-64 249.2 669 36.3
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.6e-62 244.2 439 40.5
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 5.7e-62 243.0 622 36.5
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 3.7e-61 240.4 600 35.7
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 4.1e-60 236.9 628 36.6
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 4.1e-60 236.9 635 37.6
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 5.3e-60 236.5 536 39.7
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.3e-58 231.9 551 38.1
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 2.2e-58 231.1 583 37.7
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 3.8e-58 230.3 612 35.9
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.2e-56 225.3 620 37.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.6e-56 224.9 413 41.4
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.8e-55 221.5 363 47.1
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 2.0e-54 218.0 315 45.7
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 3.3e-54 217.2 455 38.7
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 3.7e-53 213.8 628 34.7
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 1.1e-52 212.2 595 34.1
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.8e-52 211.5 594 36.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 4.1e-52 210.3 598 34.8
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.7e-50 204.9 343 43.4
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 2.2e-50 204.5 625 37.3
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 3.8e-50 203.8 499 36.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.1e-49 202.2 602 35.4
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.5e-49 201.8 350 42.6
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.5e-49 201.8 541 33.6
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 9.4e-49 199.1 691 30.8
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 2.1e-48 198.0 337 40.7
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.7e-48 197.6 645 31.2
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.0e-47 195.7 337 40.4
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.0e-47 195.7 517 35.2
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 4.0e-47 193.7 517 36.2
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 4.0e-47 193.7 517 36.2
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 4.0e-47 193.7 336 42.6
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 6.8e-47 193.0 332 42.8
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 8.8e-47 192.6 573 31.1
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 5.7e-46 189.9 501 35.9
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 1.3e-45 188.7 624 34.3
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.3e-45 188.7 595 30.4
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 2.8e-45 187.6 390 40.5
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 2.8e-45 187.6 390 40.5
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.8e-45 187.6 349 41.3
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 6.3e-45 186.4 346 41.3
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 6.3e-45 186.4 567 34.0
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.1e-44 185.7 343 42.3
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.1e-44 184.1 363 37.5
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.2e-43 182.2 335 42.4
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.7e-43 181.0 614 32.9
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 5.9e-43 179.9 346 39.0
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 7.7e-43 179.5 586 30.4
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.7e-42 178.3 609 33.8
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 2.9e-42 177.6 598 34.6
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 1.5e-41 175.3 383 36.3
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 5.5e-41 173.3 597 33.0
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 9.5e-41 172.6 453 36.2
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 3.6e-40 170.6 599 31.2
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 5.7e-38 163.3 477 32.1
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.8e-37 161.0 458 34.3
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 2.4e-36 157.9 399 36.3
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.5e-33 148.7 319 36.1
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.2e-30 139.0 171 42.7
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.5e-30 138.7 480 30.0
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 1.3e-29 135.6 336 35.4
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 2.7e-27 127.9 439 28.7
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 7.8e-27 126.3 323 32.8
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.7e-26 125.2 236 36.9
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 1.5e-22 112.1 177 55.9
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 2.0e-22 111.7 213 35.7
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 2.6e-22 111.3 247 40.5
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 8.3e-21 106.3 223 40.8
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.2e-20 104.4 535 28.2
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 5.4e-20 103.6 335 30.4
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 2.3e-18 98.2 406 28.6
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 3.9e-18 97.4 446 28.9
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.1e-18 97.1 144 52.8
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 6.6e-18 96.7 345 28.7
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 3.6e-16 90.9 322 29.8
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 2.0e-14 85.1 102 45.1
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 2.9e-13 81.3 346 29.2
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 9.2e-12 76.3 85 52.9
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 2.1e-11 75.1 274 36.9
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 6.0e-11 73.6 307 30.0
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 8.6e-10 69.7 269 26.8
VMungo1309G0147 Vigna mungo HOM05D006756 ORTHO05D001869 8.6e-10 69.7 281 26.3
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 4.3e-09 67.4 271 28.8
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 5.6e-09 67.0 476 26.7
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 7.3e-09 66.6 287 29.3
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 2.1e-08 65.1 292 26.4
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 3.6e-08 64.3 110 35.5
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 4.7e-08 63.9 275 26.5
BolC1t05369H Brassica oleracea HOM05D003044 ORTHO05D001869 1.8e-07 62.0 382 25.1
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 1.8e-07 62.0 157 32.5
Cc06_g08320 Coffea canephora HOM05D006756 ORTHO05D001869 2.4e-07 61.6 210 30.0
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 2.4e-07 61.6 323 26.9
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.1e-07 61.2 102 40.2
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 3.1e-07 61.2 294 26.5
MD15G1171200 Malus domestica HOM05D006756 ORTHO05D001869 3.1e-07 61.2 194 29.9
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.1e-07 61.2 267 28.5
Phvul.009G207200 Phaseolus vulgaris HOM05D006756 ORTHO05D001869 3.1e-07 61.2 290 24.8
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 5.2e-07 60.5 216 25.5
CANSAT11G2071 Cannabis sativa HOM05D006756 ORTHO05D001869 6.8e-07 60.1 282 28.7
Sc18g0000500 Simmondsia chinensis HOM05D006756 ORTHO05D001869 6.8e-07 60.1 175 31.4
Ca_02761_v3 Cicer arietinum L. HOM05D006756 ORTHO05D001869 8.9e-07 59.7 190 26.8
Lj1g0024911 Lotus japonicus HOM05D006756 ORTHO05D001869 8.9e-07 59.7 193 27.5
Medtr2g072590 Medicago truncatula HOM05D006756 ORTHO05D001869 8.9e-07 59.7 275 25.8
Peaxi162Scf00046g00819 Petunia axillaris HOM05D006756 ORTHO05D001869 8.9e-07 59.7 286 25.9
vmacro20571 Vaccinium macrocarpon HOM05D006756 ORTHO05D001869 8.9e-07 59.7 251 27.5
Glyma.06G217700 Glycine max HOM05D006756 ORTHO05D001869 1.2e-06 59.3 287 24.7
Lsat_1_v5_gn_8_58441 Lactuca sativa HOM05D006756 ORTHO05D001869 1.5e-06 58.9 185 32.4
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.5e-06 58.9 264 29.2
Atru.chr7.1133 Acer truncatum HOM05D006756 ORTHO05D001869 2.0e-06 58.5 284 26.1
Actinidia21975 Actinidia chinensis HOM05D006756 ORTHO05D001869 2.0e-06 58.5 258 27.9
MD02G1029800 Malus domestica HOM05D006756 ORTHO05D001869 2.6e-06 58.2 298 24.5
Medtr7g033910 Medicago truncatula HOM05D006756 ORTHO05D001869 2.6e-06 58.2 282 23.4
CSS0003155 Camellia sinensis var. sinensis HOM05D006756 ORTHO05D001869 3.4e-06 57.8 273 27.1
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 3.4e-06 57.8 270 33.3
TPR.G19799 Trifolium pratense HOM05D003044 ORTHO05D001869 3.4e-06 57.8 154 29.9
TPR.G9536 Trifolium pratense HOM05D006756 ORTHO05D001869 3.4e-06 57.8 247 26.3
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 4.4e-06 57.4 274 28.1
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 4.4e-06 57.4 296 26.7
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 5.8e-06 57.0 180 31.7
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 5.8e-06 57.0 251 28.3
Psat1g024440 Pisum sativum HOM05D006756 ORTHO05D001869 5.8e-06 57.0 178 28.1
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 7.6e-06 56.6 358 26.0
Thhalv10012771m.g Eutrema salsugineum HOM05D006756 ORTHO05D001869 7.6e-06 56.6 178 32.6
Lalb_Chr11g0072181 Lupinus albus HOM05D006756 ORTHO05D001869 7.6e-06 56.6 279 26.5
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 9.9e-06 56.2 276 28.3
FvH4_1g03050 Fragaria vesca HOM05D006756 ORTHO05D001869 9.9e-06 56.2 228 28.1
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 9.9e-06 56.2 260 25.4
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 9.9e-06 56.2 278 26.6


User provided reference genes

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