Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.9e-168 594.3 294 100.0
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.5e-63 247.3 554 35.6
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 2.1e-57 226.9 558 34.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 1.9e-55 220.3 592 32.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 1.9e-55 220.3 595 33.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 2.5e-55 219.9 594 32.5
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 2.5e-55 219.9 579 33.3
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.5e-55 219.9 594 33.2
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 3.3e-55 219.5 594 32.8
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 4.3e-55 219.2 598 32.4
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 5.6e-55 218.8 594 33.0
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 5.6e-55 218.8 592 33.1
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 5.6e-55 218.8 593 32.7
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 5.6e-55 218.8 594 32.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 9.6e-55 218.0 594 32.7
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 9.6e-55 218.0 607 32.1
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 9.6e-55 218.0 595 32.6
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 9.6e-55 218.0 595 32.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 1.6e-54 217.2 592 32.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 2.8e-54 216.5 593 32.2
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 3.6e-54 216.1 595 32.8
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 6.2e-54 215.3 595 32.4
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 6.2e-54 215.3 610 32.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 8.1e-54 214.9 594 32.0
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 8.1e-54 214.9 593 32.7
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 1.1e-53 214.5 592 32.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.4e-53 214.2 600 32.5
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 1.4e-53 214.2 594 32.3
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 2.4e-53 213.4 597 32.2
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 5.3e-53 212.2 593 32.5
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 5.3e-53 212.2 602 32.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 6.9e-53 211.8 595 32.3
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 6.9e-53 211.8 594 32.3
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 6.9e-53 211.8 594 32.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 9.0e-53 211.5 595 31.9
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 9.0e-53 211.5 564 33.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 1.2e-52 211.1 539 32.8
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.2e-52 211.1 593 31.9
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 1.2e-52 211.1 594 32.0
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.2e-52 211.1 594 32.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 1.5e-52 210.7 594 31.8
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 2.0e-52 210.3 593 31.7
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 3.4e-52 209.5 595 31.9
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 3.4e-52 209.5 595 31.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 3.4e-52 209.5 595 32.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.5e-52 209.1 534 32.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 4.5e-52 209.1 596 31.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 5.8e-52 208.8 595 31.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 9.9e-52 208.0 597 32.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 9.9e-52 208.0 597 32.0
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 9.9e-52 208.0 597 32.0
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 9.9e-52 208.0 589 31.9
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 1.3e-51 207.6 596 32.0
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.3e-51 207.6 596 32.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.3e-51 207.6 596 31.5
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 2.2e-51 206.8 593 31.7
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 2.2e-51 206.8 597 32.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 2.9e-51 206.5 588 30.8
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 2.9e-51 206.5 594 32.0
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.9e-51 206.5 596 32.2
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 3.8e-51 206.1 642 31.2
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 4.9e-51 205.7 593 31.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 8.4e-51 204.9 596 31.7
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.4e-50 204.1 580 32.2
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 1.4e-50 204.1 588 31.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 3.2e-50 203.0 585 32.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 3.2e-50 203.0 648 29.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 3.2e-50 203.0 594 31.3
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 4.2e-50 202.6 593 31.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 4.2e-50 202.6 594 31.3
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 2.1e-49 200.3 621 30.8
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 4.6e-49 199.1 593 31.4
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 1.0e-48 198.0 595 31.3
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.3e-48 197.6 585 31.5
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 1.8e-48 197.2 595 31.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 5.1e-48 195.7 596 31.0
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 6.7e-48 195.3 588 31.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 8.7e-48 194.9 579 31.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.5e-47 194.1 608 30.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.3e-47 192.6 594 30.0
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 7.4e-47 191.8 599 30.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 9.6e-47 191.4 594 30.6
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 2.8e-46 189.9 597 29.5
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 2.8e-46 189.9 597 29.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 2.8e-46 189.9 593 30.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 4.8e-46 189.1 594 30.0
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.8e-46 189.1 594 29.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 6.2e-46 188.7 597 29.5
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 6.2e-46 188.7 597 29.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 1.4e-45 187.6 594 30.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.8e-45 187.2 594 29.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 3.1e-45 186.4 635 29.9
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 2.0e-44 183.7 535 32.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.4e-44 183.0 585 31.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 1.3e-43 181.0 593 30.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 1.7e-43 180.6 595 29.1
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 2.2e-43 180.3 597 28.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 1.4e-42 177.6 606 29.2
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 3.2e-42 176.4 215 54.9
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.3e-40 170.2 287 43.2
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 2.3e-40 170.2 290 42.4
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.1e-37 159.8 290 40.7
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 3.1e-37 159.8 613 29.0
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 5.0e-35 152.5 298 37.9
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 1.8e-32 144.1 457 31.1
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.1e-31 141.4 444 28.8
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.2e-30 137.1 255 40.0
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-29 133.7 116 63.8
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.5e-28 131.0 139 53.2
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 7.2e-26 122.1 134 51.5
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 6.1e-25 119.0 129 51.2
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.9e-24 116.3 129 50.4
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.8e-22 109.4 129 46.5
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 6.9e-21 105.5 291 32.6
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.2e-20 104.8 129 45.0
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 3.4e-20 103.2 150 46.0
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 4.5e-20 102.8 129 47.3
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 4.5e-20 102.8 129 44.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 1.4e-18 97.8 129 43.4
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.9e-18 97.4 270 32.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.6e-17 93.2 178 36.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.1e-13 81.6 274 29.2
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.5e-12 76.3 66 51.5
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 5.9e-12 75.9 68 47.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.0e-11 75.1 151 39.7
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.8e-11 73.2 151 39.1
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 5.7e-07 59.3 72 38.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.7e-07 58.5 63 52.4
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.8e-06 56.2 138 34.8


User provided reference genes

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