Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 3304.2 1720 100.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2809.2 1722 83.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2734.1 1722 82.0
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2574.7 1723 77.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2562.3 1726 76.2
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2555.0 1724 75.6
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2525.4 1706 75.2
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2487.2 1724 74.6
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2481.8 1726 74.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2480.3 1733 73.5
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2475.3 1722 73.3
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2471.0 1727 73.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2469.5 1713 73.7
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2468.7 1725 73.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2461.0 1726 73.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2457.2 1723 73.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2444.1 1738 72.4
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2443.3 1727 73.2
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2431.4 1728 71.9
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2420.2 1731 71.9
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2418.7 1726 72.2
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2410.2 1721 73.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2401.7 1736 72.1
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2399.0 1734 71.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2398.6 1731 71.5
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2397.5 1711 70.7
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2395.9 1726 72.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2391.3 1725 71.4
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2390.5 1711 70.8
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2390.5 2143 63.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2389.0 1740 70.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2379.7 1698 71.7
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2379.0 1736 71.4
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2378.2 1725 71.9
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2377.1 1736 71.5
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2376.7 1728 71.2
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2372.0 1742 70.2
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2371.7 1740 71.3
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2366.3 1760 69.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2357.4 1735 71.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2335.5 1722 70.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2327.4 1736 68.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2327.0 1718 69.4
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2323.9 1710 70.1
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2323.5 1729 68.9
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2321.6 1718 69.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2318.9 1711 69.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2318.9 1717 69.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2318.5 1700 70.2
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2303.5 1658 69.1
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2301.2 1787 68.4
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2296.9 1709 69.2
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2294.6 1690 70.5
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2293.5 1709 69.5
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2284.2 1691 68.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2271.9 1722 68.2
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2244.5 1771 67.7
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2244.2 1711 68.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2238.0 1724 67.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2226.4 1762 66.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2199.1 1880 63.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2195.6 1720 65.9
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2193.7 1650 68.5
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2190.2 1700 66.5
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1689 67.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2184.8 1572 71.4
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2182.9 1623 67.8
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2181.4 1716 65.2
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2179.4 1647 67.7
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2177.9 1720 65.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2176.7 1733 65.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2172.5 1707 65.3
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2161.7 1673 67.2
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2161.0 1413 74.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2156.7 1716 65.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2154.0 1720 64.5
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2140.9 1713 64.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1708 64.5
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2126.7 1766 64.1
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2125.5 1691 65.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 2061.6 1692 65.1
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2051.6 1700 62.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 2030.4 1452 74.6
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2016.1 1295 73.4
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2011.9 1724 62.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2009.6 1291 73.7
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 2008.8 1726 61.0
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1995.7 1717 60.3
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1968.0 1158 81.1
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1968.0 1471 66.1
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1958.0 1800 60.7
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1874.4 1457 66.0
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1733.4 1743 57.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1728.4 1627 56.4
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1704.1 1673 53.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1701.0 1673 54.9
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1677.9 1627 54.8
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1654.4 1044 75.4
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1635.9 1623 52.9
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1632.5 936 83.7
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1512.3 1084 66.4
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1431.4 1142 68.3
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1405.2 1301 59.3
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1335.9 1101 65.8
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1292.7 1187 60.7
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1218.0 942 70.4
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1203.3 910 66.3
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.2e-311 1074.7 616 84.6
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.5e-301 1040.4 742 68.9
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.8e-271 939.9 600 73.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.8e-263 913.3 681 63.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.1e-262 909.8 552 80.6
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.4e-259 901.0 827 61.7
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 2.5e-251 873.6 1567 38.0
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.0e-208 731.1 847 43.1
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.4e-201 708.4 429 79.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 7.1e-166 589.7 376 75.8
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.4e-161 575.5 638 61.1
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.0e-160 571.6 329 83.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.3e-148 532.3 694 46.4
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 9.6e-147 526.2 607 56.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 3.0e-132 478.0 905 34.0
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.7e-128 463.4 215 99.5
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.2e-122 445.3 283 98.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.1e-110 406.4 457 44.6
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 3.2e-110 404.8 336 65.2
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.2e-110 404.4 535 54.6
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.0e-103 383.3 241 77.2
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 8.5e-103 380.2 246 69.9
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.2e-100 370.9 179 100.0
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-98 365.5 190 98.4
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.7e-74 285.0 175 72.6
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 3.7e-74 285.0 403 51.1
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.2e-72 280.0 283 64.7
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.1e-65 255.0 153 78.4
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 4.5e-51 208.4 115 87.8
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-49 203.4 207 45.9
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 1.5e-46 193.4 347 46.4
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.0e-43 183.0 99 90.9
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 6.4e-42 177.9 129 62.0
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 3.0e-39 169.1 130 60.8
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.8e-36 159.8 169 52.1
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 8.4e-34 151.0 218 48.2
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 9.3e-33 147.5 205 45.9
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.0e-31 144.1 123 55.3
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.3e-28 131.7 61 98.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.5e-27 130.2 107 60.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 7.6e-27 127.9 292 40.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 5.0e-26 125.2 73 83.6
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.4e-25 123.6 93 68.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 4.2e-25 122.1 216 39.8
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 7.2e-25 121.3 88 64.8
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.2e-24 120.6 63 93.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.0e-23 117.5 82 68.3
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 5.7e-22 111.7 75 78.7
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.5e-17 96.3 84 71.4
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 7.2e-17 94.7 57 80.7
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 9.4e-17 94.4 99 45.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.3e-15 89.7 76 59.2
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.6e-14 86.3 58 67.2
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.7e-14 85.1 50 86.0
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 7.4e-14 84.7 91 50.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.7e-13 83.6 51 72.5
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.8e-13 82.0 52 78.8
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.6e-11 76.3 68 54.4
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 4.2e-09 68.9 40 80.0
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 5.5e-09 68.6 165 31.5
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.5e-09 68.6 95 38.9
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 2.1e-08 66.6 35 85.7
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 2.7e-08 66.2 44 75.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 3.6e-08 65.9 43 62.8
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 3.6e-08 65.9 57 56.1
CSS0009233 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D019491 1.8e-07 63.5 29 100.0
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 2.3e-07 63.2 44 65.9
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 4.4e-06 58.9 126 32.5


User provided reference genes

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