Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.3e-92 341.3 170 100.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.8e-67 258.1 159 84.3
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.1e-66 256.9 148 89.9
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 3.8e-64 248.4 148 85.8
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.5e-63 246.5 156 84.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 1.9e-63 246.1 189 69.3
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.9e-63 246.1 148 85.1
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.9e-63 246.1 148 85.1
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.2e-63 245.4 159 78.0
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.2e-63 245.0 148 84.5
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.5e-63 244.6 148 84.5
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.2e-62 243.4 148 83.8
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.2e-62 243.4 148 82.4
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 1.2e-62 243.4 148 83.8
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.6e-62 241.9 148 83.1
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.0e-61 240.4 148 82.4
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.8e-61 239.6 148 83.1
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.8e-61 239.6 148 81.8
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 6.8e-61 237.7 149 81.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.2e-60 236.9 148 81.1
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.5e-60 236.5 148 81.1
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.5e-60 236.5 148 79.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.6e-60 235.7 148 80.4
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.6e-60 235.7 148 81.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 3.4e-60 235.3 148 80.4
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.4e-60 235.0 148 80.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.7e-60 234.6 148 79.7
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.7e-60 234.6 148 80.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 7.5e-60 234.2 148 80.4
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 7.5e-60 234.2 148 80.4
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 7.5e-60 234.2 148 80.4
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 7.5e-60 234.2 148 79.1
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 9.8e-60 233.8 148 80.4
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.3e-59 233.4 148 79.7
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.3e-59 233.4 148 79.7
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.3e-59 233.4 148 79.7
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.7e-59 233.0 148 79.7
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.7e-59 233.0 148 79.7
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.7e-59 233.0 148 79.7
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.7e-59 233.0 148 79.7
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.8e-59 232.3 148 79.7
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 4.9e-59 231.5 148 79.7
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 6.3e-59 231.1 148 79.1
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 6.3e-59 231.1 148 79.1
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 6.3e-59 231.1 148 79.1
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 6.3e-59 231.1 148 79.1
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 8.3e-59 230.7 148 79.7
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 8.3e-59 230.7 148 78.4
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.1e-58 230.3 148 79.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.1e-58 230.3 148 79.1
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.4e-58 229.9 148 77.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.4e-58 229.9 148 79.7
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.4e-58 229.9 148 79.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.8e-58 229.6 148 78.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.8e-58 229.6 148 78.4
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 3.1e-58 228.8 148 78.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 7.0e-58 227.6 148 77.7
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.2e-57 226.9 148 77.0
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.0e-57 226.1 148 76.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 2.7e-57 225.7 148 77.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.5e-57 225.3 148 75.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.5e-57 225.3 148 77.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 5.9e-57 224.6 150 76.0
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.0e-56 223.8 148 75.7
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 8.6e-56 220.7 139 79.9
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.5e-55 219.9 170 70.0
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.9e-55 219.5 192 64.1
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.9e-55 219.5 149 75.8
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 7.3e-55 217.6 148 72.3
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.2e-54 216.9 148 71.6
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.6e-54 216.5 148 72.3
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.1e-54 216.1 148 75.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.0e-52 209.5 148 73.0
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 5.7e-52 208.0 148 73.6
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.5e-52 207.6 148 72.3
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 6.6e-48 194.5 136 74.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.7e-46 188.3 132 73.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.0e-44 183.0 117 78.6
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.4e-44 182.2 151 67.5
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 9.8e-44 180.6 122 73.8
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 2.2e-43 179.5 118 74.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.9e-43 178.3 117 76.9
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.4e-42 176.8 118 75.4
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 5.4e-42 174.9 181 56.4
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.3e-40 170.2 148 64.9
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.9e-39 166.4 151 61.6
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.6e-38 163.3 148 62.2
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 3.6e-38 162.2 153 60.1
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 6.2e-38 161.4 148 60.8
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.3e-37 159.5 148 60.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 6.4e-35 151.4 168 51.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 5.4e-34 148.3 89 84.3
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.9e-32 142.1 78 91.0
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 3.9e-32 142.1 158 51.3
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.9e-31 139.8 92 78.3
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.3e-31 138.7 93 75.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 4.3e-31 138.7 78 87.2
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 4.3e-31 138.7 154 43.5
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 4.3e-31 138.7 81 86.4
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 5.6e-31 138.3 89 77.5
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 5.6e-31 138.3 78 88.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.6e-31 138.3 78 88.5
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 7.3e-31 137.9 80 86.2
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 9.5e-31 137.5 78 88.5
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.2e-30 137.1 78 87.2
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.1e-30 136.3 81 84.0
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 3.6e-30 135.6 82 85.4
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 4.7e-30 135.2 78 85.9
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 8.1e-30 134.4 92 76.1
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.8e-29 133.3 118 62.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 2.3e-29 132.9 80 83.8
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 2.3e-29 132.9 76 85.5
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 5.2e-29 131.7 85 77.6
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 6.8e-29 131.3 84 77.4
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 8.9e-29 131.0 99 67.7
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 8.9e-29 131.0 99 67.7
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 8.9e-29 131.0 78 83.3
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.2e-28 130.6 78 82.1
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.2e-28 130.6 88 76.1
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.2e-28 130.6 78 83.3
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.5e-28 130.2 78 82.1
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 2.0e-28 129.8 140 45.7
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.6e-28 129.4 87 75.9
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 4.4e-28 128.6 78 82.1
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.4e-28 128.6 78 82.1
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 4.4e-28 128.6 81 79.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 4.4e-28 128.6 78 82.1
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.4e-28 128.6 78 82.1
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 7.6e-28 127.9 82 80.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 7.6e-28 127.9 82 80.5
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 7.6e-28 127.9 138 54.3
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 7.6e-28 127.9 96 70.8
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.9e-28 127.5 78 80.8
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.9e-28 127.5 85 77.6
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 9.9e-28 127.5 80 78.8
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 4.9e-27 125.2 145 43.4
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.4e-26 123.6 85 75.3
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.4e-26 121.7 62 91.9
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.2e-25 120.6 75 77.3
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.6e-25 120.2 67 82.1
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 2.1e-22 109.8 56 92.9
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 2.1e-22 109.8 56 92.9
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 2.1e-22 109.8 56 92.9
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.7e-22 108.6 56 89.3
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 6.2e-22 108.2 56 89.3
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 8.1e-22 107.8 56 91.1
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 8.1e-22 107.8 56 91.1
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 5.2e-21 105.1 56 89.3
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 2.2e-19 99.8 57 82.5
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 2.9e-19 99.4 75 58.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 3.8e-19 99.0 56 83.9
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.2e-18 95.9 122 47.5
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.6e-17 92.0 51 90.2
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.6e-15 85.1 73 60.3
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.1e-13 79.3 53 77.4
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 6.9e-13 78.2 40 85.0
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 5.4e-10 68.6 138 34.1
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-07 60.8 41 75.6
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.8e-06 56.2 25 100.0


User provided reference genes

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