Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.3e-160 571.2 832 100.0
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.1e-155 553.9 832 99.3
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 3.9e-85 320.5 834 75.7
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.4e-63 248.8 619 83.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.0e-61 241.1 642 79.4
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.2e-57 229.2 626 56.2
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 7.2e-55 219.9 193 60.6
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.5e-52 211.5 762 63.4
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.4e-50 205.7 217 55.3
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 2.5e-47 194.9 192 55.2
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.2e-47 194.5 206 51.5
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 3.2e-47 194.5 213 52.1
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 4.2e-47 194.1 213 51.2
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 6.1e-46 190.3 199 51.3
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.0e-45 189.5 190 53.7
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 4.1e-42 177.6 198 47.0
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 5.9e-41 173.7 226 47.8
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 5.9e-41 173.7 193 50.3
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 6.5e-40 170.2 188 48.4
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 6.5e-40 170.2 214 44.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 2.5e-39 168.3 133 60.2
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 5.5e-39 167.2 195 46.7
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 9.4e-39 166.4 178 49.4
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 9.4e-39 166.4 156 50.6
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 2.7e-38 164.9 207 46.9
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 2.3e-37 161.8 176 47.7
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 2.3e-37 161.8 176 47.7
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 2.3e-37 161.8 188 47.3
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 2.0e-36 158.7 176 47.7
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.3e-36 157.9 198 41.9
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 3.3e-36 157.9 191 46.1
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.3e-35 156.0 192 42.7
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.3e-35 156.0 176 50.0
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 2.8e-35 154.8 170 46.5
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.8e-35 154.1 176 50.0
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.8e-35 154.1 176 48.9
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 4.8e-35 154.1 172 48.3
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 6.3e-35 153.7 141 56.0
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.4e-34 152.5 191 44.5
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.8e-34 152.1 172 48.8
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 3.1e-34 151.4 172 47.7
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 4.1e-34 151.0 188 41.5
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 4.1e-34 151.0 149 54.4
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 4.5e-33 147.5 136 54.4
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.3e-32 146.0 213 41.8
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 3.8e-32 144.4 204 41.2
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 8.5e-32 143.3 172 43.0
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 8.5e-32 143.3 155 47.1
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-31 142.9 188 44.1
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 3.2e-31 141.4 189 41.3
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 7.2e-31 140.2 217 40.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.6e-30 139.0 140 50.7
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 2.1e-30 138.7 144 51.4
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 6.1e-30 137.1 136 50.7
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.0e-30 136.7 158 45.6
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.4e-29 136.0 189 41.8
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.4e-29 136.0 159 45.3
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.3e-29 135.2 205 39.0
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 5.2e-29 134.0 139 47.5
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.7e-29 133.7 208 39.4
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.7e-29 133.7 184 40.2
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 8.8e-29 133.3 194 41.2
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 2.0e-28 132.1 139 46.8
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 9.7e-28 129.8 177 40.1
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 9.7e-28 129.8 190 43.7
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.7e-27 129.0 161 44.1
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 3.7e-27 127.9 139 46.0
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 6.3e-27 127.1 217 35.5
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 1.1e-26 126.3 138 45.7
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.8e-26 125.6 139 44.6
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 5.3e-26 124.0 197 39.1
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 9.1e-26 123.2 172 40.1
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.6e-25 122.5 170 41.2
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.0e-25 122.1 142 45.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.0e-25 122.1 95 62.1
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 3.5e-25 121.3 194 37.1
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 3.5e-25 121.3 138 46.4
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 5.9e-25 120.6 169 40.8
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 7.7e-25 120.2 138 45.7
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.0e-24 119.8 176 39.8
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 1.3e-24 119.4 171 37.4
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.3e-24 119.4 138 45.7
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.3e-24 119.4 138 45.7
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.7e-24 119.0 147 42.2
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.7e-24 119.0 160 41.2
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.5e-23 115.9 87 64.4
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.5e-23 115.9 186 39.2
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.9e-23 115.5 135 45.9
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.9e-23 115.5 168 39.9
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.9e-23 115.5 164 39.6
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.5e-23 115.2 136 44.1
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 3.2e-23 114.8 190 38.4
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 3.2e-23 114.8 160 40.6
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 5.5e-23 114.0 160 40.6
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.2e-22 112.8 188 36.2
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.2e-22 112.8 113 48.7
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.6e-22 112.5 193 36.3
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.7e-22 110.9 134 44.0
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 4.7e-22 110.9 192 37.5
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 3.0e-21 108.2 189 37.0
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-20 106.3 136 41.9
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 7.5e-20 103.6 203 34.0
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 7.5e-20 103.6 203 35.0
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 7.5e-20 103.6 157 37.6
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.4e-18 99.4 150 34.7
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-18 99.4 193 36.8
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.4e-18 99.4 135 38.5
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.4e-18 98.6 171 35.1
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.9e-17 94.0 88 54.5
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 5.9e-17 94.0 125 40.0
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 1.7e-16 92.4 194 34.0
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.2e-16 92.0 148 32.4
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.9e-16 91.7 151 34.4
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.5e-15 89.4 151 33.8
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.2e-15 87.8 88 50.0
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 5.5e-15 87.4 91 47.3
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 7.2e-15 87.0 91 48.4
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 7.2e-15 87.0 178 34.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 2.7e-14 85.1 194 34.0
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.0e-13 81.3 159 31.4
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 4.0e-13 81.3 91 46.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 6.8e-13 80.5 81 50.6
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 4.4e-12 77.8 87 47.1
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 4.4e-12 77.8 147 29.9
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 1.7e-11 75.9 139 32.4
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 2.8e-11 75.1 142 31.7
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 3.7e-11 74.7 138 31.9
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 3.7e-11 74.7 139 31.7
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 3.7e-11 74.7 138 31.9
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 3.7e-11 74.7 138 31.9
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.9e-11 74.3 71 53.5
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 1.1e-10 73.2 152 32.2
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 9.2e-10 70.1 138 32.6
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.2e-09 69.7 138 31.9
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.5e-09 68.2 86 41.9
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 4.5e-09 67.8 88 39.8
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 1.0e-08 66.6 59 50.8
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 1.3e-08 66.2 140 34.3
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 2.3e-08 65.5 138 30.4
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 2.3e-08 65.5 135 34.1
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 2.9e-08 65.1 138 31.2
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 3.8e-08 64.7 138 35.5
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 6.6e-08 63.9 91 38.5
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 8.6e-08 63.5 140 32.9
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 8.6e-08 63.5 145 29.0
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 1.1e-07 63.2 135 31.9
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 1.9e-07 62.4 138 30.4
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 2.5e-07 62.0 114 30.7
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 3.3e-07 61.6 174 26.4
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 7.3e-07 60.5 140 32.1
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.2e-06 59.7 133 27.8
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.6e-06 59.3 210 27.6
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.6e-06 59.3 134 31.3
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.6e-06 59.3 133 29.3
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 2.1e-06 58.9 143 27.3
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 2.1e-06 58.9 137 31.4
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.8e-06 58.5 137 25.5
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 3.6e-06 58.2 108 33.3
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 3.6e-06 58.2 135 31.1
Sc03g0005490 Simmondsia chinensis HOM05D007496 ORTHO05D009479 3.6e-06 58.2 140 32.1
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 4.7e-06 57.8 75 45.3
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 4.7e-06 57.8 135 31.9
Lj4g0018028 Lotus japonicus HOM05D007496 ORTHO05D009479 6.1e-06 57.4 138 31.9


User provided reference genes

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