Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 2.0e-56 222.2 116 100.0
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 7.9e-37 157.1 110 76.4
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 1.5e-32 142.9 110 71.8
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 4.5e-32 141.4 110 69.1
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 2.9e-31 138.7 110 67.3
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 8.5e-31 137.1 110 67.3
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 1.5e-30 136.3 110 67.3
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 4.2e-30 134.8 110 67.3
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 4.2e-30 134.8 110 65.5
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 1.6e-29 132.9 110 65.5
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 1.6e-29 132.9 110 67.3
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 2.1e-29 132.5 110 65.5
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 2.7e-29 132.1 110 67.3
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 3.6e-29 131.7 110 65.5
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 4.7e-29 131.3 115 64.3
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 4.7e-29 131.3 110 65.5
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 4.7e-29 131.3 110 68.2
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 8.0e-29 130.6 110 65.5
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 1.4e-28 129.8 110 62.7
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 1.8e-28 129.4 110 64.5
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 2.3e-28 129.0 110 61.8
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 3.0e-28 128.6 111 64.9
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 3.9e-28 128.3 110 63.6
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 5.2e-28 127.9 110 65.5
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 6.7e-28 127.5 110 65.5
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.7e-28 127.5 110 65.5
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 8.8e-28 127.1 110 63.6
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 1.1e-27 126.7 110 62.7
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 3.3e-27 125.2 110 62.7
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 5.7e-27 124.4 110 60.9
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 9.7e-27 123.6 110 65.5
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 9.7e-27 123.6 110 61.8
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 9.7e-27 123.6 110 61.8
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.3e-26 123.2 110 60.9
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 1.3e-26 123.2 110 60.9
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 1.7e-26 122.9 118 57.6
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 4.8e-26 121.3 110 62.7
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 6.3e-26 120.9 110 60.0
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.1e-25 120.2 76 80.3
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.1e-25 120.2 76 80.3
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 4.1e-25 118.2 110 60.0
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 5.3e-25 117.9 110 59.1
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 5.3e-25 117.9 110 59.1
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 7.7e-24 114.0 106 60.4
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 7.7e-24 114.0 110 56.4
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 5.0e-23 111.3 126 56.3
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 6.5e-23 110.9 110 57.3
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 1.1e-22 110.2 110 52.7
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 2.5e-22 109.0 108 56.5
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 3.2e-22 108.6 108 55.6
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 4.2e-22 108.2 110 56.4
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 7.2e-22 107.5 110 59.1
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 9.4e-22 107.1 73 74.0
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 8.0e-21 104.0 110 55.5
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 8.0e-21 104.0 110 54.5
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 1.4e-20 103.2 108 53.7
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 2.3e-20 102.4 110 53.6
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 6.8e-20 100.9 117 51.3
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 2.0e-19 99.4 110 52.7
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 3.7e-18 95.1 80 63.8
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 4.8e-18 94.7 200 36.5
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 1.8e-17 92.8 74 64.9
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 2.4e-17 92.4 110 49.1
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 4.1e-17 91.7 71 70.4
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 2.0e-16 89.4 110 47.3
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 2.0e-16 89.4 110 50.9
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 4.5e-16 88.2 110 49.1
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 4.5e-16 88.2 110 49.1
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 5.9e-16 87.8 107 51.4
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 1.7e-15 86.3 110 48.2
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 1.7e-15 86.3 110 48.2
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 1.7e-15 86.3 110 48.2
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 1.7e-15 86.3 90 51.1
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 2.2e-15 85.9 110 46.4
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 8.5e-15 84.0 108 46.3
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 1.9e-14 82.8 110 46.4
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 7.2e-14 80.9 107 49.5
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 2.1e-13 79.3 110 45.5
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 1.0e-12 77.0 110 43.6
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 2.0e-11 72.8 110 44.5
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 2.0e-11 72.8 136 39.7
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 2.0e-11 72.8 91 47.3
AL2G14840 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 9.1e-09 63.9 68 47.1


User provided reference genes

Program Settings