Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.8e-128 462.6 238 100.0
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 9.0e-128 460.3 238 99.2
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.4e-107 393.3 237 83.5
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.8e-104 382.9 237 81.4
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.4e-93 346.7 236 72.5
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.9e-93 346.3 235 74.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.5e-93 345.9 237 75.5
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 7.2e-93 344.4 237 71.3
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.0e-91 340.5 238 72.7
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.2e-89 332.8 240 70.4
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 3.7e-89 332.0 208 79.3
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 4.8e-89 331.6 237 67.9
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 6.3e-89 331.3 238 71.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.8e-88 329.7 231 71.0
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.2e-87 327.0 219 76.7
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.3e-86 323.6 235 69.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 8.5e-86 320.9 236 69.5
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.1e-85 320.5 238 68.9
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.5e-85 320.1 237 67.9
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.9e-85 319.7 238 69.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.9e-85 319.7 237 65.4
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.9e-85 319.7 236 67.8
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 7.2e-85 317.8 236 67.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 7.2e-85 317.8 233 68.2
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.2e-84 317.0 236 68.2
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 2.1e-84 316.2 236 67.4
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.7e-84 315.8 236 66.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.7e-84 315.8 237 66.7
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 2.7e-84 315.8 237 66.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 8.0e-84 314.3 238 68.5
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.3e-83 312.8 229 67.2
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 5.2e-83 311.6 237 63.3
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 6.7e-83 311.2 236 66.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 6.7e-83 311.2 236 66.1
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.5e-82 310.1 258 61.2
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 3.3e-82 308.9 239 67.4
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 4.4e-82 308.5 234 67.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 5.7e-82 308.1 236 65.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.3e-81 307.0 236 64.4
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.3e-81 307.0 231 65.8
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.7e-81 306.6 238 66.8
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.2e-81 306.2 236 66.9
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 2.2e-81 306.2 237 62.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.8e-81 305.1 239 66.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 4.8e-81 305.1 234 67.1
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.4e-80 302.8 234 65.0
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.3e-80 301.6 239 66.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 7.0e-80 301.2 264 59.5
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.2e-79 300.4 231 65.8
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 7.7e-79 297.7 233 63.9
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.0e-78 297.4 206 69.9
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.4e-74 282.3 196 70.4
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 5.7e-74 281.6 196 73.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 4.1e-72 275.4 228 61.4
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 9.1e-72 274.2 225 64.0
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.6e-71 273.5 238 59.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.6e-71 273.5 237 59.5
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 5.9e-71 271.6 240 58.3
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.5e-69 266.9 207 63.8
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.2e-68 263.8 238 58.4
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.1e-68 263.1 194 67.5
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.6e-68 262.3 210 65.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.0e-67 260.8 219 58.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.4e-67 260.4 195 67.2
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.5e-66 256.9 195 65.6
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 4.4e-66 255.4 237 55.7
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.4e-66 255.4 233 55.8
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 9.8e-66 254.2 238 55.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.3e-65 253.8 237 55.3
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.7e-65 253.4 262 55.3
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.8e-65 252.7 237 55.7
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 3.7e-65 252.3 232 55.2
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 3.7e-65 252.3 237 55.7
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 6.3e-65 251.5 237 54.9
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 6.3e-65 251.5 237 54.9
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 6.3e-65 251.5 237 54.9
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 8.3e-65 251.1 250 54.4
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 8.3e-65 251.1 294 49.3
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.1e-64 250.8 233 55.4
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.1e-64 250.8 233 55.4
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.1e-64 250.8 236 53.4
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.1e-64 250.8 184 69.6
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.4e-64 250.4 238 56.3
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 5.4e-64 248.4 233 55.4
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 7.0e-64 248.1 237 55.3
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.8e-62 242.3 240 52.1
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.1e-61 240.7 239 51.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.9e-61 240.0 207 61.4
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-60 237.3 195 61.5
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.0e-59 234.2 237 53.6
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 6.8e-59 231.5 232 54.7
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 5.8e-58 228.4 239 53.1
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 9.8e-58 227.6 237 49.4
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-56 223.8 237 53.2
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 9.2e-56 221.1 234 48.3
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.0e-55 218.4 195 58.5
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-54 217.2 233 53.6
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.5e-53 213.0 174 62.1
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-53 212.6 237 48.1
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-51 206.5 228 48.2
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.6e-50 203.0 270 47.0
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.4e-50 202.2 234 47.9
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.8e-44 183.0 162 56.8
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 4.7e-44 182.2 235 43.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-43 181.0 235 44.3
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-42 176.8 230 44.8
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-42 176.8 235 42.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 5.8e-42 175.3 235 40.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.1e-39 166.8 205 46.8
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-37 161.0 230 40.4
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.1e-35 154.5 149 52.3
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.0e-34 150.2 116 62.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.3e-33 147.5 109 64.2
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.7e-33 147.1 237 40.1
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.4e-32 143.3 183 47.5
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 3.2e-32 142.9 105 64.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.3e-30 136.7 110 62.7
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.1e-29 134.4 150 47.3
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 5.6e-29 132.1 205 40.0
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.5e-26 124.0 105 61.9
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.6e-23 112.5 103 55.3
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 5.1e-22 109.0 137 46.7
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 6.6e-22 108.6 106 52.8
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.9e-21 107.1 133 47.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.9e-21 107.1 117 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.5e-21 106.7 104 53.8
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.6e-20 104.0 165 40.0
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-18 97.8 218 30.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 5.8e-18 95.5 107 50.5
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.3e-17 94.4 104 47.1
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-15 87.0 71 56.3
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.1e-12 75.1 71 46.5
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 5.3e-11 72.4 114 37.7
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.0e-09 68.2 75 50.7
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 8.4e-09 65.1 114 37.7
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 8.4e-09 65.1 183 27.9
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-08 63.2 92 43.5
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-08 63.2 92 43.5
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-08 63.2 92 43.5
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.7e-07 60.1 42 66.7
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 1.8e-06 57.4 91 37.4


User provided reference genes

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