Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 6.0e-253 877.1 461 100.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 5.0e-175 618.2 483 72.3
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.2e-163 580.5 329 92.1
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 6.8e-148 528.1 345 76.8
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.5e-147 526.9 403 69.0
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 2.2e-146 523.1 345 75.9
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.1e-145 520.8 464 63.1
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 4.1e-145 518.8 345 74.8
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 4.1e-145 518.8 345 73.9
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 7.0e-145 518.1 439 64.5
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 1.7e-143 513.5 436 64.9
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 7.3e-142 508.1 346 75.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 2.1e-141 506.5 355 71.0
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.1e-140 504.2 345 73.3
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 2.3e-140 503.1 345 73.0
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 5.2e-140 501.9 346 73.7
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.6e-139 499.6 419 64.4
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 7.5e-139 498.0 438 64.6
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 3.7e-138 495.7 341 73.0
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 4.9e-138 495.4 345 72.2
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 1.2e-136 490.7 426 61.5
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.7e-136 489.6 341 72.7
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 4.6e-136 488.8 345 71.6
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 6.0e-136 488.4 345 70.7
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.3e-135 487.3 346 70.2
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 3.3e-134 482.6 350 70.3
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 4.3e-134 482.3 322 75.2
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 5.6e-134 481.9 345 71.3
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.5e-134 481.1 345 70.4
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 1.2e-133 480.7 342 71.9
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 8.1e-133 478.0 340 70.3
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 8.1e-133 478.0 344 69.5
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 2.3e-132 476.5 341 69.2
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 5.2e-132 475.3 500 58.4
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 6.8e-132 474.9 447 58.8
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 6.8e-132 474.9 345 70.1
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 1.5e-131 473.8 340 69.1
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.4e-131 472.6 345 69.9
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 4.4e-131 472.2 524 55.2
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 5.8e-131 471.9 345 68.7
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.3e-130 470.7 304 74.7
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.9e-130 469.5 346 68.5
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.8e-130 469.2 378 66.4
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.1e-129 467.6 349 66.5
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.6e-128 463.8 448 59.4
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 3.9e-127 459.1 329 69.3
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 3.9e-127 459.1 285 77.9
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 6.6e-127 458.4 346 66.5
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 8.6e-127 458.0 347 67.7
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 2.5e-126 456.4 346 67.6
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.2e-125 454.1 345 68.1
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.1e-124 451.1 340 67.9
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.4e-124 449.9 340 67.1
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 6.9e-124 448.4 343 66.8
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 7.6e-123 444.9 363 63.1
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 7.6e-123 444.9 349 63.3
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.2e-122 443.4 293 73.4
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.2e-122 443.4 394 61.9
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.8e-122 442.6 370 63.5
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 8.4e-122 441.4 346 65.3
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.4e-121 440.7 371 62.0
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 1.4e-121 440.7 351 64.1
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.4e-121 440.7 347 66.3
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 3.2e-121 439.5 285 73.0
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 3.2e-121 439.5 345 64.6
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.4e-121 438.7 399 58.9
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 5.4e-121 438.7 340 64.4
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 7.1e-121 438.3 357 63.9
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 7.1e-121 438.3 347 66.3
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 7.1e-121 438.3 347 65.7
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.6e-120 437.2 380 60.5
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 7.8e-120 434.9 343 64.1
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 2.3e-119 433.3 346 65.0
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 2.3e-119 433.3 317 68.5
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.9e-118 430.3 349 63.0
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 9.6e-118 427.9 326 67.2
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 3.6e-117 426.0 349 62.5
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 4.8e-117 425.6 348 62.4
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.1e-116 424.5 350 62.9
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 1.4e-116 424.1 352 63.1
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.8e-116 423.7 428 55.8
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.6e-115 419.9 412 55.1
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 1.4e-113 414.1 273 71.4
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.2e-113 412.9 304 67.1
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 1.2e-112 411.0 341 62.5
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 1.2e-112 411.0 339 61.9
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 3.5e-112 409.5 347 62.8
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 3.9e-111 406.0 305 66.6
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 7.4e-102 375.2 256 72.3
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.7e-101 372.9 239 77.8
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.4e-100 370.9 364 53.6
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.1e-100 369.8 360 59.2
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 9.0e-100 368.2 285 62.8
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.4e-97 360.9 337 55.8
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.2e-97 359.8 399 52.1
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 4.3e-94 349.4 237 73.4
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 1.0e-90 338.2 238 69.3
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 8.8e-79 298.5 303 55.4
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 1.5e-78 297.7 343 51.6
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 6.5e-74 282.3 196 71.4
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.4e-73 281.2 276 54.0
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 1.0e-71 275.0 210 64.8
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.1e-68 265.0 297 45.8
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 2.9e-66 256.9 226 59.7
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.2e-64 251.5 275 50.9
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.6e-64 250.0 226 54.9
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 5.2e-55 219.5 193 60.1
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 2.0e-54 217.6 192 55.2
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.4e-52 210.7 142 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.2e-51 208.4 240 46.7
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 7.7e-51 205.7 290 41.4
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 3.2e-49 200.3 152 63.8
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 2.8e-45 187.2 203 51.2
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.4e-44 184.9 199 52.3
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 2.1e-40 171.0 332 38.0
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.0e-38 164.5 186 47.8
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 9.2e-36 155.6 109 66.1
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 9.2e-36 155.6 146 56.2
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 3.6e-32 143.7 195 46.2
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 6.2e-32 142.9 250 43.2
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 6.2e-32 142.9 231 42.9
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 1.2e-27 128.6 91 64.8
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.3e-26 125.2 145 49.7
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 3.0e-26 124.0 205 47.3
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.5e-25 121.7 311 32.2
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.6e-24 117.1 108 53.7
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 1.1e-23 115.5 78 71.8
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 3.1e-23 114.0 105 57.1
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.5e-22 111.7 219 36.1
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 4.4e-22 110.2 77 72.7
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 1.3e-21 108.6 108 53.7
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.4e-20 105.1 60 86.7
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.0e-18 99.0 105 51.4
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.0e-18 99.0 63 73.0
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 1.5e-17 95.1 164 36.6
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 2.0e-14 84.7 58 67.2
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.9e-12 78.2 264 26.9
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.9e-12 78.2 70 58.6
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 2.7e-11 74.3 311 24.4
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 8.7e-10 69.3 257 25.3
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 1.5e-09 68.6 259 24.3
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 1.9e-09 68.2 311 24.4
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 9.6e-09 65.9 62 50.0


User provided reference genes

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