Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 3015.7 1535 100.0
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 2800.8 1453 97.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 2307.3 1569 75.8
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2243.0 1509 76.9
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2236.5 1638 71.7
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1980.3 1502 67.2
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1948.7 1512 65.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1896.7 1508 64.9
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1883.6 1505 64.9
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1866.7 1503 64.0
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1852.8 1596 61.5
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1847.0 1517 63.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1835.1 1504 63.2
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1825.8 1506 62.4
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1821.2 1506 62.4
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1818.5 1502 62.6
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1816.6 1503 62.7
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1816.6 1537 61.6
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1798.5 1503 62.3
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1786.5 1501 61.5
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1778.5 1508 61.3
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1773.8 1509 61.0
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1758.8 1368 67.0
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1753.4 1506 61.6
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1752.3 1505 61.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1752.3 1508 61.4
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1749.2 1505 60.9
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1701.4 1518 58.8
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1701.0 1503 59.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1699.9 1649 56.3
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1696.0 1502 58.4
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1692.9 1504 59.2
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1689.9 1692 55.1
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1686.8 1521 58.2
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1680.6 1508 59.2
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1676.4 1512 59.3
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1667.9 1502 58.4
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1667.5 1521 57.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1667.1 1511 58.0
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1661.7 1514 57.7
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1655.6 1501 57.9
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1654.8 1501 58.0
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1652.5 1503 57.8
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1652.1 1511 57.9
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1648.3 1537 57.1
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1647.9 1512 58.1
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1647.5 1529 57.7
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1641.7 1502 57.8
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1639.0 1520 57.5
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1625.5 1508 57.2
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1625.1 1521 56.4
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1615.1 1512 57.3
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1612.8 1504 57.1
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1610.5 1506 56.3
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1601.6 1367 60.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1588.2 1426 58.4
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1582.4 1509 56.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1578.5 1512 55.4
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1569.3 1508 57.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1535.8 1513 53.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1502.6 1513 53.3
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1496.5 1223 62.3
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1493.4 1507 52.2
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1493.0 1607 50.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1491.9 1507 52.1
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1474.9 1513 51.9
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1469.5 1509 52.0
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1469.5 1509 52.0
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1469.5 1509 52.0
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1466.8 1533 51.7
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1461.4 1512 51.8
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1457.2 1302 59.6
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1455.3 1531 51.4
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1444.5 1529 51.7
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1437.9 1393 56.4
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1412.9 1577 50.2
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1403.7 1546 51.5
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1391.3 1303 57.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1379.4 1501 51.4
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1352.8 1148 60.6
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1335.5 1503 49.8
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1334.3 1508 48.9
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1333.5 1350 52.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1299.3 1512 47.7
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1213.0 1505 45.4
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1185.6 830 74.6
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1184.1 1504 45.1
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1169.1 1000 60.3
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1153.3 1684 42.3
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 0.0e+00 1077.8 834 67.3
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.9e-287 993.4 1040 50.9
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 8.6e-280 968.0 644 76.6
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.2e-277 958.7 828 63.2
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.4e-245 854.4 645 67.4
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 6.3e-214 749.2 742 57.1
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.2e-206 724.2 617 62.6
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.7e-201 707.2 1588 32.6
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.9e-200 703.4 612 60.9
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 4.7e-193 679.9 1145 38.4
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 9.7e-191 672.2 788 46.4
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-187 661.4 643 55.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.8e-187 660.2 529 62.2
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.6e-183 647.5 352 92.9
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.5e-164 583.6 533 59.3
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.7e-156 557.8 598 51.3
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.9e-150 537.7 1473 28.6
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 6.4e-142 510.0 418 62.2
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 6.2e-137 493.4 429 59.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.7e-126 458.8 432 56.9
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.4e-126 456.4 437 56.8
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.4e-125 454.9 503 49.5
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 9.9e-119 433.0 362 61.6
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-117 429.5 373 59.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.0e-115 422.9 545 48.4
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-111 408.3 343 63.3
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.2e-100 372.9 338 57.1
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.7e-99 367.1 258 73.6
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 8.2e-81 307.0 445 40.0
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.0e-78 300.1 329 46.8
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 3.3e-74 285.0 275 54.5
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.1e-69 270.0 266 52.6
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 7.2e-69 267.3 1176 24.4
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.6e-68 265.0 234 61.5
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.7e-57 229.6 233 54.5
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.1e-52 212.6 260 46.5
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.0e-50 206.1 250 48.0
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 4.4e-50 204.9 145 70.3
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.4e-50 204.9 205 50.7
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 7.3e-45 187.6 142 65.5
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 4.4e-42 178.3 161 56.5
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 7.8e-39 167.5 187 49.2
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.7e-38 166.4 181 50.8
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-37 162.9 178 51.1
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 8.9e-35 154.1 157 49.7
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 3.4e-34 152.1 256 38.3
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.7e-33 148.7 147 57.8
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 4.9e-33 148.3 167 51.5
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.2e-32 145.6 226 42.9
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 7.8e-31 141.0 256 35.2
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 1.4e-27 130.2 123 49.6
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 8.9e-27 127.5 127 52.8
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-25 123.2 104 55.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 3.7e-25 122.1 85 67.1
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-20 107.1 103 54.4
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.0e-19 102.1 74 63.5
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 7.6e-18 97.8 93 50.5
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 4.9e-17 95.1 124 43.5
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.4e-16 91.7 110 45.5
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 4.6e-15 88.6 79 58.2
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.9e-13 83.2 52 75.0
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 5.6e-13 81.6 124 41.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.2e-12 78.2 53 71.7
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 6.9e-11 74.7 62 58.1
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.2e-10 73.9 59 61.0
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 2.6e-10 72.8 59 59.3
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-08 67.4 98 42.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-08 67.4 98 42.9
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.5e-07 62.4 112 34.8
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 3.9e-06 58.9 47 68.1


User provided reference genes

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