Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.3e-273 944.5 499 100.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.0e-178 628.6 513 69.8
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 6.2e-155 551.6 495 65.1
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 7.1e-151 538.1 506 63.6
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.4e-145 519.2 430 69.1
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.6e-142 510.4 513 59.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 8.4e-136 488.0 492 61.4
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.6e-134 483.8 489 61.8
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 2.5e-124 449.9 500 55.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 7.2e-111 405.2 512 48.8
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.7e-110 403.3 505 51.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 8.0e-110 401.7 506 51.0
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.7e-109 398.7 499 49.5
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.4e-108 396.0 502 48.0
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 7.5e-108 395.2 510 50.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.3e-107 394.4 513 49.3
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.8e-107 392.5 502 47.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.1e-106 389.8 501 47.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 4.1e-106 389.4 509 49.1
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.9e-104 383.3 487 50.5
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 8.5e-104 381.7 506 48.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.1e-103 381.3 508 48.8
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.9e-103 380.6 499 52.3
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.6e-102 377.5 500 49.8
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 3.6e-102 376.3 518 49.0
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.7e-102 375.9 487 50.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.0e-101 374.8 506 49.0
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.0e-101 374.8 509 48.7
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.4e-101 374.4 504 48.6
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.8e-101 374.0 507 49.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 6.8e-101 372.1 513 49.3
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-100 371.3 506 47.0
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.4e-100 369.8 519 48.2
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 9.8e-100 368.2 479 50.7
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.7e-99 367.5 506 46.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 6.3e-99 365.5 507 50.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.2e-97 361.3 507 47.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.6e-97 360.9 493 47.7
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.5e-97 359.8 501 48.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.5e-97 359.4 517 47.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 7.7e-97 358.6 507 46.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 2.2e-96 357.1 506 47.4
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.2e-96 357.1 500 47.2
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.1e-95 354.8 506 47.8
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.2e-95 352.1 501 46.3
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.7e-94 350.1 505 45.3
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.0e-92 344.0 492 47.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.2e-91 340.5 496 46.4
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.6e-89 334.3 500 46.4
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.5e-89 333.2 528 46.8
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.3e-88 330.5 513 47.6
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 4.7e-86 322.8 502 44.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.0e-85 321.6 435 50.1
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.3e-85 320.5 495 45.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 6.8e-85 318.9 508 44.5
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.5e-84 317.8 502 45.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.4e-84 316.6 506 45.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.4e-84 316.2 512 44.9
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.7e-83 314.3 483 47.2
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.9e-83 313.5 525 41.9
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 7.0e-82 308.9 493 44.4
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 9.2e-82 308.5 497 44.3
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 9.2e-82 308.5 505 42.0
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.6e-81 307.8 502 43.4
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.0e-80 305.1 511 42.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-79 301.6 505 42.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-79 301.2 535 41.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.3e-79 300.1 528 40.5
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 7.3e-79 298.9 509 43.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.8e-78 297.0 529 39.5
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 8.0e-78 295.4 506 43.3
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.4e-77 294.7 402 51.2
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.2e-76 291.6 515 41.0
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.1e-74 285.0 508 41.7
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.4e-74 284.6 430 47.2
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 4.1e-74 283.1 470 43.6
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.1e-74 283.1 504 42.3
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 4.6e-73 279.6 415 48.9
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.3e-72 278.1 509 40.3
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.7e-72 277.7 509 40.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.9e-72 276.6 437 44.9
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 3.9e-72 276.6 509 41.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-71 275.0 521 39.7
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.9e-71 274.2 529 41.2
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 9.5e-71 271.9 509 39.7
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.7e-70 269.6 521 39.3
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 4.7e-70 269.6 496 40.3
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 4.7e-70 269.6 374 45.7
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 6.2e-70 269.2 508 40.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.1e-70 268.9 532 37.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.4e-69 268.1 531 41.8
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.9e-69 265.4 505 40.8
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.4e-68 263.1 493 41.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.3e-67 261.5 444 42.8
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.4e-66 258.1 442 43.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.4e-66 257.3 502 38.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 9.2e-66 255.4 508 38.6
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.5e-65 253.4 498 40.2
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-64 251.9 401 42.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.6e-64 248.8 471 40.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 7.3e-63 245.7 490 38.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.2e-62 245.0 482 40.9
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-62 244.6 526 37.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 8.1e-62 242.3 428 41.8
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 6.8e-61 239.2 458 41.3
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.5e-60 238.0 528 38.3
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.4e-60 236.5 441 40.1
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.3e-59 235.0 234 56.4
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.0e-56 225.3 479 39.9
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.7e-56 224.6 421 39.7
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.1e-56 223.0 353 43.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.6e-56 222.2 498 37.3
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-55 221.9 401 40.4
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 5.6e-55 219.5 511 37.2
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 5.6e-55 219.5 425 39.8
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 9.6e-55 218.8 395 40.8
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.1e-54 217.6 455 36.9
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 8.1e-54 215.7 427 39.6
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 6.8e-53 212.6 362 42.5
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 8.9e-53 212.2 505 36.6
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.2e-51 207.6 418 38.8
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.2e-50 203.8 407 38.8
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.2e-50 203.8 407 38.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.4e-50 203.0 486 35.6
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.7e-49 200.7 476 35.1
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 4.6e-49 199.9 410 38.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-48 198.7 425 36.9
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 5.6e-47 193.0 445 36.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 9.0e-45 185.7 444 34.2
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.4e-44 183.3 408 35.8
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-43 181.8 413 36.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.9e-43 180.6 444 36.0
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-41 175.3 458 35.6
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.3e-40 171.8 442 34.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 4.3e-39 166.8 118 78.0
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 9.6e-39 165.6 144 66.7
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.1e-37 162.2 278 42.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-37 161.8 411 32.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 4.0e-37 160.2 410 32.2
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 5.3e-37 159.8 410 32.2
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-35 154.5 352 36.9
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 2.9e-35 154.1 295 44.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.9e-35 154.1 441 34.0
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 4.9e-35 153.3 456 33.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.3e-32 145.2 384 32.8
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.3e-31 140.6 144 54.2
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 7.4e-31 139.4 205 44.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 9.0e-29 132.5 359 31.8
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.5e-28 130.2 139 51.8
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.0e-27 129.0 496 31.9
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.5e-26 123.2 174 42.5
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.6e-25 120.2 115 58.3
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-22 112.1 223 37.2
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 7.6e-20 102.8 211 33.2
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.9e-19 100.9 547 28.0
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.9e-18 98.2 410 28.5
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.1e-17 94.7 507 27.2
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 7.9e-17 92.8 331 29.9
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.7e-16 89.4 103 45.6
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.2e-14 82.8 240 33.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-13 82.4 104 45.2
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-13 82.0 104 47.1
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 9.0e-13 79.3 361 27.4
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.0e-11 75.9 60 66.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-11 74.7 282 32.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 6.5e-11 73.2 290 28.6
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-10 72.0 302 27.2
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 3.2e-10 70.9 133 37.6
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 7.2e-10 69.7 307 27.4
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.1e-09 68.2 298 25.5
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.4e-08 65.5 162 36.4
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 5.1e-08 63.5 73 42.5
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 5.1e-08 63.5 366 26.2
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 8.8e-08 62.8 68 47.1
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 7.4e-07 59.7 44 61.4


User provided reference genes

Program Settings