Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 6.2e-64 247.3 123 100.0
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 3.2e-20 102.1 113 58.4
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 2.7e-19 99.0 110 50.9
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 4.6e-19 98.2 109 50.5
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 6.1e-19 97.8 109 47.7
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 2.3e-18 95.9 109 54.1
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 2.8e-16 89.0 96 49.0
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 2.8e-16 89.0 103 50.5
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.1e-15 87.0 112 47.3
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 1.4e-15 86.7 106 42.5
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.8e-15 86.3 103 43.7
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 1.8e-15 86.3 97 50.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 1.8e-15 86.3 97 50.5
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 4.1e-15 85.1 112 47.3
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 5.3e-15 84.7 112 42.0
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 6.9e-15 84.3 115 52.2
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 1.2e-14 83.6 93 51.6
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 2.6e-14 82.4 76 52.6
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 2.6e-14 82.4 100 45.0
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.5e-14 81.6 112 41.1
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 4.5e-14 81.6 93 50.5
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 4.5e-14 81.6 112 43.8
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 7.7e-14 80.9 104 47.1
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.0e-13 80.5 93 48.4
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.2e-13 79.3 101 42.6
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 6.5e-13 77.8 97 48.5
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 8.5e-13 77.4 76 50.0
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 2.5e-12 75.9 104 40.4
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 4.2e-12 75.1 54 64.8
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 5.5e-12 74.7 105 42.9
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 7.2e-12 74.3 110 43.6
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 9.4e-12 73.9 104 45.2
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 9.4e-12 73.9 98 50.0
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.2e-11 73.6 81 45.7
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 1.6e-11 73.2 107 43.0
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.6e-11 73.2 107 43.0
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 1.6e-11 73.2 82 48.8
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 2.1e-11 72.8 81 49.4
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 2.7e-11 72.4 111 44.1
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 2.7e-11 72.4 98 40.8
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 2.7e-11 72.4 100 42.0
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.7e-11 72.4 93 45.2
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 3.6e-11 72.0 84 46.4
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 6.1e-11 71.2 58 58.6
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 6.1e-11 71.2 83 48.2
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 7.9e-11 70.9 56 57.1
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 7.9e-11 70.9 49 61.2
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 1.4e-10 70.1 98 44.9
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.4e-10 70.1 92 43.5
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.4e-10 70.1 96 41.7
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.4e-10 70.1 112 43.8
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 1.8e-10 69.7 100 42.0
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 2.3e-10 69.3 90 43.3
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 3.0e-10 68.9 45 68.9
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 3.0e-10 68.9 120 40.0
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 3.9e-10 68.6 70 54.3
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 3.9e-10 68.6 70 54.3
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 3.9e-10 68.6 82 48.8
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 3.9e-10 68.6 110 41.8
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 5.1e-10 68.2 114 44.7
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 6.7e-10 67.8 58 55.2
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 8.8e-10 67.4 58 55.2
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 8.8e-10 67.4 58 55.2
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 8.8e-10 67.4 111 42.3
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 8.8e-10 67.4 110 41.8
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 1.1e-09 67.0 69 50.7
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 1.5e-09 66.6 92 41.3
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 1.5e-09 66.6 88 43.2
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 2.0e-09 66.2 46 63.0
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 2.0e-09 66.2 60 55.0
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 2.0e-09 66.2 73 45.2
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 2.6e-09 65.9 58 53.4
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 2.6e-09 65.9 58 53.4
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.6e-09 65.9 111 44.1
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 2.6e-09 65.9 91 41.8
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 3.3e-09 65.5 69 49.3
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 4.4e-09 65.1 49 59.2
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 4.4e-09 65.1 74 45.9
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 4.4e-09 65.1 44 63.6
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 4.4e-09 65.1 44 63.6
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 4.4e-09 65.1 102 37.3
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 5.7e-09 64.7 92 44.6
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 9.7e-09 63.9 91 40.7
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 1.3e-08 63.5 107 40.2
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 1.3e-08 63.5 110 42.7
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 1.7e-08 63.2 92 42.4
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.2e-08 62.8 41 58.5
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 2.2e-08 62.8 108 39.8
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 2.8e-08 62.4 87 39.1
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.8e-08 62.4 89 42.7
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 2.8e-08 62.4 89 47.2
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 3.7e-08 62.0 69 40.6
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 4.8e-08 61.6 113 39.8
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 6.3e-08 61.2 79 43.0
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 6.3e-08 61.2 89 42.7
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 6.3e-08 61.2 110 40.9
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 8.2e-08 60.8 53 60.4
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 1.1e-07 60.5 103 43.7
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 1.4e-07 60.1 53 56.6
SalBow5G1753 Salvia bowleyana HOM05D006100 ORTHO05D007539 1.8e-07 59.7 91 39.6
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.1e-07 58.9 43 65.1
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 5.3e-07 58.2 111 40.5
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.5e-06 56.6 113 35.4
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 2.0e-06 56.2 110 33.6
Lsat_1_v5_gn_3_76280 Lactuca sativa HOM05D006100 ORTHO05D007539 2.6e-06 55.8 82 37.8
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 2.6e-06 55.8 39 61.5
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 3.4e-06 55.5 31 74.2
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 4.5e-06 55.1 52 48.1
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 5.9e-06 54.7 112 37.5
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 7.7e-06 54.3 97 37.1


User provided reference genes

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