Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.3e-94 349.7 184 100.0
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.3e-91 339.0 184 97.3
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.8e-91 337.4 184 96.7
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.1e-77 293.5 188 83.5
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.4e-75 286.6 176 85.8
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 2.6e-74 282.3 190 79.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.9e-72 276.2 193 78.2
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.4e-72 275.8 197 75.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 2.4e-72 275.8 195 77.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 7.1e-72 274.2 184 77.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 7.1e-72 274.2 193 77.2
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 7.1e-72 274.2 192 76.6
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.1e-71 272.7 193 76.7
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.7e-71 272.3 182 78.0
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 4.6e-71 271.6 193 75.1
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.6e-71 271.6 188 77.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 6.0e-71 271.2 193 76.2
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 7.8e-71 270.8 155 89.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.3e-70 270.0 191 76.4
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.3e-70 270.0 193 76.2
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.7e-70 269.6 182 78.0
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.7e-70 269.6 193 75.6
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.3e-70 269.2 176 80.1
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 3.0e-70 268.9 193 75.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 3.0e-70 268.9 188 77.1
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.9e-70 268.5 193 75.6
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 5.1e-70 268.1 181 76.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 6.6e-70 267.7 193 75.1
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.6e-70 267.7 197 72.6
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 8.6e-70 267.3 189 73.5
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.1e-69 266.9 158 84.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.5e-69 266.5 182 74.7
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.3e-69 265.4 193 75.1
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 3.3e-69 265.4 192 75.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 4.3e-69 265.0 191 74.3
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 5.6e-69 264.6 193 72.5
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 5.6e-69 264.6 193 72.5
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 7.3e-69 264.2 185 74.1
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.6e-69 263.8 188 76.1
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-68 263.5 197 71.6
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.2e-68 263.5 191 73.3
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.2e-68 263.5 193 74.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.2e-68 263.5 190 75.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.6e-68 263.1 187 75.4
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.6e-68 263.1 187 75.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.1e-68 262.7 193 74.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 4.7e-68 261.5 189 74.6
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 4.7e-68 261.5 188 75.0
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 8.1e-68 260.8 175 79.4
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.1e-67 260.4 167 77.8
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.4e-67 260.0 165 79.4
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 4.0e-67 258.5 195 71.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.0e-67 258.5 202 69.3
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.0e-67 258.5 202 69.3
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.0e-67 258.5 202 69.3
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.9e-67 257.3 186 74.7
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.5e-66 256.5 191 72.3
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.5e-66 256.5 180 75.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.0e-66 256.1 194 73.7
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.6e-66 255.8 171 79.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.4e-66 255.4 183 74.9
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.4e-66 255.4 196 71.9
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 4.4e-66 255.0 194 71.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.4e-66 255.0 186 71.0
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 5.8e-66 254.6 191 69.6
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 7.6e-66 254.2 183 74.3
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 7.6e-66 254.2 188 73.4
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 9.9e-66 253.8 198 68.2
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.3e-65 253.4 169 76.3
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.8e-65 251.9 192 70.8
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 3.8e-65 251.9 182 72.0
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.9e-65 251.5 191 70.7
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.1e-64 250.4 166 75.3
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.4e-64 250.0 183 72.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.9e-64 249.6 163 76.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.4e-64 249.2 193 69.4
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 7.1e-64 247.7 153 82.4
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 9.3e-64 247.3 163 76.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.2e-63 246.9 182 70.9
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.6e-63 246.5 185 69.7
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.7e-63 245.7 163 76.1
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.7e-63 245.7 163 75.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.7e-63 245.7 184 72.8
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 2.7e-63 245.7 188 71.3
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.7e-63 245.7 192 69.3
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.5e-63 245.4 171 74.9
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 6.0e-63 244.6 187 69.0
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 7.8e-63 244.2 196 66.8
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 7.8e-63 244.2 160 79.4
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.0e-62 243.8 161 77.6
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.0e-62 243.8 187 69.0
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.0e-62 243.8 194 67.0
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 2.3e-62 242.7 160 78.1
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 3.0e-62 242.3 163 75.5
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.6e-62 241.1 188 67.6
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.6e-62 241.1 184 69.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.5e-61 240.0 187 68.4
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.5e-61 239.2 160 76.9
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 5.6e-61 238.0 194 69.1
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 9.6e-61 237.3 209 62.7
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.6e-60 236.5 193 66.3
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.1e-60 236.1 186 66.7
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 3.1e-59 232.3 179 70.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.1e-59 232.3 194 65.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 4.0e-59 231.9 193 66.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 6.9e-59 231.1 175 72.0
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 9.0e-59 230.7 179 69.3
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.2e-58 230.3 187 65.2
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.0e-58 229.6 192 66.7
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.4e-58 228.8 188 68.1
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 5.8e-58 228.0 187 66.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.2e-57 226.1 208 63.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 3.8e-57 225.3 170 67.1
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 4.9e-57 224.9 185 64.9
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 4.6e-55 218.4 193 62.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.9e-55 217.6 195 65.1
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.3e-54 216.9 193 61.1
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 3.0e-54 215.7 167 65.3
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.9e-54 215.3 141 77.3
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 5.6e-53 211.5 241 53.1
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 5.6e-53 211.5 185 63.8
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 7.3e-53 211.1 186 63.4
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 7.3e-53 211.1 163 68.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 2.1e-52 209.5 187 62.6
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 3.8e-49 198.7 156 68.6
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 9.3e-48 194.1 170 62.9
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 6.7e-46 188.0 150 68.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 4.8e-44 181.8 239 50.6
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 6.2e-44 181.4 147 63.3
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.1e-43 180.6 184 60.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.8e-43 179.9 167 61.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.6e-42 176.0 191 55.5
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 7.6e-42 174.5 191 55.0
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.7e-41 173.3 137 69.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.2e-41 172.9 111 77.5
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.2e-41 172.9 172 59.3
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 4.9e-41 171.8 132 66.7
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.5e-40 169.5 104 78.8
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 6.7e-38 161.4 152 61.2
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 8.7e-38 161.0 162 51.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.7e-36 155.6 144 53.5
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-35 154.1 129 62.0
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.0e-35 151.0 130 63.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.0e-34 149.8 130 63.8
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.0e-34 149.8 130 63.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 4.5e-34 148.7 154 52.6
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.0e-33 145.2 130 63.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.5e-32 142.9 93 74.2
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 4.6e-31 138.7 82 80.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 6.1e-31 138.3 120 61.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.8e-30 136.7 135 51.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.3e-30 136.3 166 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.0e-30 136.0 170 44.1
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-24 117.1 113 60.2
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-22 110.5 184 44.0
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.0e-18 96.7 86 64.0
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 3.0e-14 82.8 59 66.1
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.6e-10 70.5 48 79.2
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.5e-10 69.3 104 48.1
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 9.4e-08 61.2 176 35.2


User provided reference genes

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