Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 0.0e+00 2712.9 1437 100.0
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1408.3 1530 58.2
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1318.1 1743 50.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 0.0e+00 1261.5 1627 51.4
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 0.0e+00 1152.1 1723 46.8
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 0.0e+00 1088.6 1574 47.8
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.4e-300 1036.2 1404 48.6
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 4.8e-224 782.7 1667 39.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.6e-216 757.7 498 90.8
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 7.2e-212 742.3 1803 36.4
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.0e-206 724.2 835 52.7
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.3e-191 672.9 1648 36.8
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.6e-174 618.2 1786 32.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 8.6e-173 612.5 1617 32.7
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 4.0e-170 603.6 1661 34.9
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 4.4e-169 600.1 1867 32.6
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 3.7e-168 597.0 1873 32.8
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 5.4e-159 566.6 1803 33.4
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.5e-156 558.5 1954 30.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 2.5e-148 531.2 1747 33.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.6e-147 528.5 1591 34.6
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 5.2e-146 523.5 1624 32.6
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 4.4e-145 520.4 1792 31.8
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 5.8e-145 520.0 2000 29.6
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.4e-143 515.4 1904 31.7
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 3.0e-141 507.7 1545 34.1
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.1e-140 505.8 1703 33.0
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.5e-134 484.2 1938 29.3
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.0e-134 483.4 1639 32.7
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 3.0e-133 481.1 1572 31.9
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 3.3e-132 477.6 1901 29.5
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 4.3e-132 477.2 1901 29.7
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 7.1e-127 459.9 1621 31.5
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.6e-126 458.8 1672 29.7
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 2.3e-125 454.9 945 40.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 9.6e-124 449.5 1321 35.4
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.6e-123 447.6 1868 30.1
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.0e-121 441.8 1752 30.8
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 4.9e-120 437.2 1735 30.0
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.2e-118 432.6 1725 32.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-116 426.0 1852 29.9
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 9.9e-113 412.9 1800 27.4
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 3.8e-112 411.0 1512 31.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.3e-108 397.5 1289 33.9
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-107 395.6 850 40.9
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.9e-106 390.2 1294 31.9
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.6e-105 388.3 1470 29.7
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 3.4e-105 387.9 1602 30.0
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.7e-104 385.6 1297 33.1
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.2e-104 385.2 850 40.5
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.2e-103 380.9 1290 32.3
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 4.2e-103 380.9 1644 30.7
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 9.3e-103 379.8 1608 28.2
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 9.3e-103 379.8 850 40.6
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.3e-101 375.9 905 39.3
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.6e-99 369.0 852 39.4
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-99 369.0 850 39.4
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.1e-98 364.8 1790 29.4
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 3.8e-96 357.8 1842 28.1
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.2e-95 354.8 1733 28.2
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.5e-95 354.0 1732 28.3
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 7.9e-94 350.1 1562 29.3
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.1e-93 347.4 1756 29.2
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-91 342.4 1576 28.1
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 2.8e-91 341.7 681 42.9
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.5e-89 334.3 1216 32.3
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.5e-88 330.5 1688 28.3
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 9.4e-87 326.6 790 39.5
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.0e-85 323.2 1675 28.4
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.1e-84 319.7 1451 28.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.1e-82 313.2 1599 26.7
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.4e-82 312.8 955 32.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.4e-82 312.0 1594 29.6
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.3e-82 310.8 1653 25.9
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.1e-79 303.1 1612 28.3
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.6e-76 292.0 1689 27.4
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 3.7e-75 288.1 1643 28.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.4e-74 285.4 1622 29.3
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.6e-73 282.7 288 55.2
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.0e-73 282.3 1699 27.5
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 4.5e-73 281.2 1769 26.5
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 3.2e-71 275.0 1650 27.6
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 5.5e-71 274.2 1251 28.0
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 4.7e-70 271.2 1584 27.1
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 8.8e-69 266.9 917 29.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.3e-68 265.0 602 42.5
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.3e-68 265.0 451 48.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 7.5e-68 263.8 1698 26.9
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 9.7e-68 263.5 1698 28.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.8e-67 261.9 1737 27.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.4e-66 259.6 1463 24.5
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.8e-66 259.2 890 34.2
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 4.1e-66 258.1 491 49.7
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.6e-65 256.1 1633 26.7
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.3e-64 253.1 1405 26.6
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.6e-62 246.1 1677 26.2
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 8.0e-62 243.8 613 40.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 7.5e-60 237.3 476 49.2
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.5e-57 228.4 989 32.8
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.3e-56 226.5 1276 26.6
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 6.6e-56 224.2 1599 26.8
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 4.7e-54 218.0 1699 27.3
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.7e-54 218.0 1654 25.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.6e-47 194.5 706 29.6
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.8e-46 192.2 1628 25.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 4.4e-44 184.9 387 37.5
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 4.9e-43 181.4 1385 24.1
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 5.4e-42 177.9 435 35.2
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 7.0e-42 177.6 676 34.0
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 3.5e-41 175.3 1632 25.6
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 4.3e-39 168.3 612 36.6
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.8e-38 165.6 437 34.1
CSS0025459 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.6e-38 165.2 94 94.7
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 4.7e-38 164.9 697 36.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.1e-37 162.2 388 35.1
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 3.1e-37 162.2 388 35.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 7.5e-36 157.5 385 35.1
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 7.5e-36 157.5 385 35.1
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.2e-34 152.1 206 45.1
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 5.1e-32 144.8 256 57.0
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 2.5e-31 142.5 325 33.5
Actinidia30400 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.0e-29 135.2 153 51.6
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.4e-28 132.1 322 32.0
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 3.2e-26 125.6 641 26.2
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.1e-23 117.1 638 26.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 7.3e-23 114.4 261 33.3
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.6e-22 113.2 67 79.1
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 2.4e-21 109.4 86 72.1
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.0e-20 106.3 568 28.9
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.3e-19 103.6 391 31.2
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 4.6e-17 95.1 251 32.3
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 6.0e-17 94.7 465 26.7
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 7.8e-17 94.4 93 52.7
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 4.3e-15 88.6 277 31.4
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.2e-14 87.0 58 69.0
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.6e-14 86.7 60 66.7
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 6.2e-14 84.7 495 25.1
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 4.0e-13 82.0 268 32.5
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.7e-11 76.6 436 25.9
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-11 76.3 257 32.7
MBI13_g20252_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D033708 3.2e-10 72.4 93 50.5
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 5.4e-10 71.6 60 71.7
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 2.1e-09 69.7 427 35.4
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 1.0e-08 67.4 72 48.6
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.0e-08 67.4 58 58.6
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 8.7e-08 64.3 77 46.8
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 7.3e-07 61.2 65 49.2
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 2.8e-06 59.3 72 45.8
ATR0712G152 Amborella trichopoda HOM05D004836 ORTHO05D005150 4.8e-06 58.5 285 27.7


User provided reference genes

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