Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029594 Camellia sinensis var. sinensis HOM05D000288 ORTHO05D000173 3.5e-40 167.9 91 100.0
vmacro13175 Vaccinium macrocarpon HOM05D000288 ORTHO05D000173 1.1e-20 103.2 88 69.3
Solyc01g095650.4 Solanum lycopersicum HOM05D000288 ORTHO05D000173 5.7e-14 80.9 86 59.3
Sopen01g039400 Solanum pennellii HOM05D000288 ORTHO05D000173 9.7e-14 80.1 86 58.1
GSVIVG01027073001 Vitis vinifera HOM05D000288 ORTHO05D000173 1.1e-12 76.6 89 59.6
Actinidia20228 Actinidia chinensis HOM05D000288 ORTHO05D000173 3.1e-12 75.1 91 56.0
Cc02_g39140 Coffea canephora HOM05D000288 ORTHO05D000173 4.1e-12 74.7 93 51.6
QL04p056729 Quercus lobata HOM05D000288 ORTHO05D000173 5.9e-11 70.9 93 47.3
Peaxi162Scf00786g00438 Petunia axillaris HOM05D000288 ORTHO05D000173 1.3e-10 69.7 86 55.8
TAR375G0671 Trochodendron aralioides HOM05D000288 ORTHO05D000173 1.3e-10 69.7 94 56.4
PGSC0003DMG400000213 Solanum tuberosum HOM05D000288 ORTHO05D000173 1.7e-10 69.3 82 52.4
Nitab4.5_0000838g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 1.4e-09 66.2 66 60.6
Migut.N01557 Erythranthe guttata HOM05D000288 ORTHO05D000173 3.2e-09 65.1 87 52.9
Nn3g19053 Nelumbo nucifera HOM05D000288 ORTHO05D000173 4.2e-09 64.7 95 47.4
Oeu007904.1 Olea europaea HOM05D001772 ORTHO05D005958 4.2e-09 64.7 68 52.9
TAR374G0181 Trochodendron aralioides HOM05D001772 ORTHO05D005958 4.2e-09 64.7 64 64.1
Nn1g01832 Nelumbo nucifera HOM05D000288 ORTHO05D000173 7.2e-09 63.9 99 47.5
Actinidia28499 Actinidia chinensis HOM05D001772 ORTHO05D005958 1.6e-08 62.8 70 57.1
TWI59G1211 Tripterygium wilfordii HOM05D000288 ORTHO05D000173 1.6e-08 62.8 100 46.0
Haze_15632 Corylus avellana HOM05D000288 ORTHO05D000173 3.6e-08 61.6 75 52.0
CANSAT56G0699 Cannabis sativa HOM05D000288 ORTHO05D000173 4.7e-08 61.2 94 51.1
DCAR_021940 Daucus carota HOM05D001404 ORTHO05D002309 6.1e-08 60.8 63 55.6
Cfa003821 Carpinus fangiana HOM05D000288 ORTHO05D000173 7.9e-08 60.5 75 52.0
Sed0026278 Sechium edule HOM05D000288 ORTHO05D000173 7.9e-08 60.5 92 50.0
Atru.chr5.642 Acer truncatum HOM05D000288 ORTHO05D000173 1.0e-07 60.1 91 51.6
Thhalv10008889m.g Eutrema salsugineum HOM05D000288 ORTHO05D000173 1.4e-07 59.7 112 43.8
SGA_v2.0_scaffold203G41505 Striga asiatica HOM05D000288 ORTHO05D000173 1.4e-07 59.7 86 44.2
Potri.014G096400 Populus trichocarpa HOM05D000288 ORTHO05D000173 2.3e-07 58.9 86 47.7
DCAR_025246 Daucus carota HOM05D000288 ORTHO05D000173 3.0e-07 58.5 62 54.8
Migut.B01088 Erythranthe guttata HOM05D000288 ORTHO05D000173 3.0e-07 58.5 88 51.1
HanXRQChr15g0483711 Helianthus annuus HOM05D000288 ORTHO05D000173 3.0e-07 58.5 90 48.9
Nitab4.5_0011592g0030 Nicotiana tabacum HOM05D000288 ORTHO05D000173 3.9e-07 58.2 40 70.0
Rhsim01G0171200 Rhododendron simsii HOM05D000288 ORTHO05D000173 3.9e-07 58.2 59 59.3
Sp1g00920 Schrenkiella parvula HOM05D000288 ORTHO05D000173 5.1e-07 57.8 112 43.8
SalBow5G2634 Salvia bowleyana HOM05D000288 ORTHO05D000173 6.7e-07 57.4 47 59.6
Eucgr.D00189 Eucalyptus grandis HOM05D000288 ORTHO05D000173 8.8e-07 57.0 103 44.7
MD07G1147400 Malus domestica HOM05D000288 ORTHO05D000173 8.8e-07 57.0 86 48.8
MSTRG.28251 Avicennia marina HOM05D000288 ORTHO05D000173 1.1e-06 56.6 92 45.7
ClCG09G009530 Citrullus lanatus HOM05D000288 ORTHO05D000173 1.1e-06 56.6 89 48.3
RcHm_v2.0_Chr1g0359181 Rosa chinensis HOM05D000288 ORTHO05D000173 1.1e-06 56.6 104 47.1
VMungo1215G0249 Vigna mungo HOM05D000288 ORTHO05D000173 1.5e-06 56.2 100 44.0
MD03G1162100 Malus domestica HOM05D000288 ORTHO05D000173 2.0e-06 55.8 30 83.3
Manes.05G024800 Manihot esculenta HOM05D000288 ORTHO05D000173 2.0e-06 55.8 96 45.8
CsaV3_7G025320 Cucumis sativus L. HOM05D000288 ORTHO05D000173 4.4e-06 54.7 89 44.9
Os05g0489800 Oryza sativa ssp. japonica HOM05D000288 ORTHO05D000173 4.4e-06 54.7 98 44.9
unitig_699.g19799 Utricularia gibba HOM05D000288 ORTHO05D000173 4.4e-06 54.7 46 58.7
EL10Ac4g08670 Beta vulgaris HOM05D000288 ORTHO05D000173 5.7e-06 54.3 87 44.8
Gohir.A07G138600 Gossypium hirsutum HOM05D000288 ORTHO05D000173 9.7e-06 53.5 90 47.8
Lj6g0000112 Lotus japonicus HOM05D000288 ORTHO05D000173 9.7e-06 53.5 95 43.2
vmacro20859 Vaccinium macrocarpon HOM05D000288 ORTHO05D000173 9.7e-06 53.5 34 79.4


User provided reference genes

Program Settings