Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 0.0e+00 1330.9 786 100.0
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 0.0e+00 1320.1 786 98.5
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 3.4e-232 808.9 887 62.2
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.5e-216 756.9 875 59.5
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.4e-206 723.8 886 57.9
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.2e-189 667.5 823 56.3
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 3.1e-185 652.9 870 53.4
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 2.1e-181 640.2 954 47.8
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 5.2e-180 635.6 948 45.9
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.5e-174 617.5 855 49.9
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 3.0e-172 609.8 856 52.3
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.8e-169 600.5 870 53.2
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 7.7e-168 595.1 813 53.5
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.0e-167 594.7 874 53.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 2.7e-165 586.6 887 48.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 2.0e-163 580.5 878 50.9
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.1e-161 573.2 851 49.8
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.0e-159 568.2 900 50.4
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.3e-159 567.8 922 46.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.9e-159 566.6 828 51.4
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 7.2e-158 562.0 857 51.1
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.2e-157 561.2 845 50.3
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.6e-157 559.7 869 48.9
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 6.8e-156 555.4 842 50.8
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 4.4e-155 552.7 887 50.1
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 9.8e-155 551.6 884 49.9
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.3e-154 551.2 847 50.9
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 4.9e-154 549.3 912 45.8
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 7.0e-153 545.4 959 44.3
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.1e-150 538.1 827 49.9
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 6.8e-148 528.9 862 48.7
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 8.3e-146 521.9 786 52.2
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 1.1e-145 521.5 937 44.4
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.4e-145 520.4 803 47.9
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.0e-143 515.0 899 46.6
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 5.0e-143 512.7 826 50.1
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 8.6e-143 511.9 821 49.0
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.9e-142 510.8 820 49.4
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 4.3e-142 509.6 871 45.5
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.8e-141 506.9 757 51.1
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 4.7e-141 506.1 788 49.4
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.4e-140 504.6 824 49.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.1e-140 503.4 823 45.8
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.2e-139 501.5 1003 42.3
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 7.5e-139 498.8 758 52.0
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.3e-138 498.0 790 51.4
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.4e-137 494.6 848 44.0
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 9.2e-137 491.9 868 45.0
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 4.6e-136 489.6 823 47.4
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.0e-135 486.9 832 46.6
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 3.9e-135 486.5 868 45.0
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 2.3e-132 477.2 787 52.1
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 9.9e-131 471.9 876 45.2
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.0e-127 461.8 737 47.4
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.0e-127 461.8 848 44.7
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.0e-127 460.3 801 46.8
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 8.6e-127 458.8 884 43.3
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 7.3e-126 455.7 834 43.5
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 9.6e-126 455.3 750 45.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.8e-124 451.1 784 43.1
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 4.0e-124 449.9 881 43.0
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.8e-123 446.0 818 41.1
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.2e-120 438.3 846 46.2
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.6e-120 438.0 804 46.8
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 6.0e-120 436.0 682 45.3
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 6.0e-120 436.0 865 45.7
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 8.7e-119 432.2 746 51.1
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 5.6e-118 429.5 811 41.2
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 4.4e-115 419.9 775 40.0
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 2.2e-114 417.5 488 54.5
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.2e-113 413.7 780 40.5
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 2.3e-111 407.5 821 42.1
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 1.3e-109 401.7 882 41.2
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 6.2e-109 399.4 392 60.2
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 3.5e-104 383.6 433 54.7
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 4.6e-104 383.3 827 42.0
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 3.3e-102 377.1 808 41.6
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.6e-101 374.8 675 42.5
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.1e-100 370.5 819 38.8
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 4.0e-100 370.2 727 44.0
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 6.9e-100 369.4 812 41.7
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 6.9e-100 369.4 857 40.3
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.1e-97 362.1 787 41.3
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.4e-97 361.7 798 40.7
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 9.3e-97 359.0 868 40.3
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.5e-96 357.1 667 43.8
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.3e-95 355.1 747 39.9
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 5.1e-95 353.2 809 40.2
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.8e-93 347.4 540 45.7
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 8.2e-93 345.9 744 43.1
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.1e-92 343.6 796 42.3
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 7.2e-89 332.8 815 39.1
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.2e-83 315.5 652 39.3
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.9e-81 308.1 612 40.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 3.2e-81 307.4 871 34.2
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 9.1e-60 236.1 624 39.9
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 2.8e-53 214.5 321 47.4
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.1e-52 212.6 627 34.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.1e-52 212.6 627 34.1
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.1e-49 202.6 317 55.5
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 3.5e-43 181.0 149 67.8
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.0e-42 177.2 530 40.9
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.0e-39 167.9 877 26.7
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 4.6e-35 154.1 361 38.8
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 1.0e-31 142.9 195 51.3
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 5.2e-31 140.6 357 33.6
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.2e-27 129.4 130 56.9
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.8e-24 118.2 250 42.4
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 8.9e-23 113.2 140 50.7
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.4e-22 111.3 419 30.1
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 6.4e-21 107.1 164 43.3
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.9e-17 95.5 60 75.0
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 5.2e-15 87.4 61 67.2
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.9e-13 81.6 94 54.3
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 6.4e-13 80.5 110 51.8
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 7.8e-11 73.6 48 83.3
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 5.1e-10 70.9 42 76.2
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 4.3e-09 67.8 337 27.0
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.4e-07 62.0 56 55.4


User provided reference genes

Program Settings