Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029563 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 3.3e-37 157.9 83 100.0
CSS0045732 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 3.3e-37 157.9 83 100.0
CSS0007483 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D013262 3.1e-19 98.2 83 63.9
PGSC0003DMG400026633 Solanum tuberosum HOM05D012232 ORTHO05D013262 1.4e-11 72.8 69 53.6
Lsat_1_v5_gn_7_23461 Lactuca sativa HOM05D012232 ORTHO05D010552 1.2e-10 69.7 65 55.4
TAR624G1413 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.9e-09 65.1 84 46.4
THA.LOC104826219 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 3.8e-09 64.7 66 50.0
THA.LOC104826220 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 3.8e-09 64.7 66 50.0
Gohir.A05G156400 Gossypium hirsutum HOM05D012232 ORTHO05D013262 1.5e-08 62.8 87 41.4
Gohir.D05G159300 Gossypium hirsutum HOM05D012232 ORTHO05D013262 2.5e-08 62.0 87 41.4
Cfa014710 Carpinus fangiana HOM05D008879 ORTHO05D010552 4.2e-08 61.2 84 42.9
Haze_13339 Corylus avellana HOM05D008879 ORTHO05D010552 4.2e-08 61.2 84 42.9
Potri.001G376200 Populus trichocarpa HOM05D008879 ORTHO05D010552 4.2e-08 61.2 66 48.5
Manes.16G036050 Manihot esculenta HOM05D012232 ORTHO05D013262 7.2e-08 60.5 64 50.0
Thecc.06G174800 Theobroma cacao HOM05D012232 ORTHO05D013262 9.4e-08 60.1 84 42.9
Potri.011G063750 Populus trichocarpa HOM05D012232 ORTHO05D013262 1.2e-07 59.7 85 42.4
THA.LOC104815845 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 2.1e-07 58.9 62 50.0
Thecc.10G087500 Theobroma cacao HOM05D012232 ORTHO05D013262 2.7e-07 58.5 84 41.7
BraA03t11008Z Brassica rapa HOM05D008879 ORTHO05D010552 3.6e-07 58.2 44 65.9
BcaB01g04065 Brassica carinata HOM05D008879 ORTHO05D010552 6.1e-07 57.4 43 65.1
BcaB02g10362 Brassica carinata HOM05D008879 ORTHO05D010552 6.1e-07 57.4 41 61.0
Manes.17G053400 Manihot esculenta HOM05D012232 ORTHO05D013262 6.1e-07 57.4 84 44.0
Haze_06271 Corylus avellana HOM05D019009 ORTHO05D013262 8.0e-07 57.0 67 41.8
BcaC01g05980 Brassica carinata HOM05D008879 ORTHO05D010552 1.4e-06 56.2 43 65.1
C03p20490 Brassica napus HOM05D008879 ORTHO05D010552 1.4e-06 56.2 43 65.1
BolC3t14429H Brassica oleracea HOM05D008879 ORTHO05D010552 1.4e-06 56.2 43 65.1
Potri.011G096900 Populus trichocarpa HOM05D017499 ORTHO05D010552 1.4e-06 56.2 65 47.7
A03p17370 Brassica napus HOM05D008879 ORTHO05D010552 1.8e-06 55.8 44 63.6
AL4G26260 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 2.3e-06 55.5 54 55.6
Atru.chr6.2826 Acer truncatum HOM05D008879 ORTHO05D010552 3.0e-06 55.1 88 39.8
BcaC02g11194 Brassica carinata HOM05D008879 ORTHO05D010552 3.0e-06 55.1 43 60.5
C04p19410 Brassica napus HOM05D008879 ORTHO05D010552 3.0e-06 55.1 43 60.5
BolC4t23473H Brassica oleracea HOM05D008879 ORTHO05D010552 3.0e-06 55.1 43 60.5
CARHR124670 Cardamine hirsuta HOM05D008879 ORTHO05D010552 3.0e-06 55.1 42 59.5
AT2G31083 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 4.0e-06 54.7 54 55.6
A04p23850 Brassica napus HOM05D008879 ORTHO05D010552 4.0e-06 54.7 44 61.4
A05p14570 Brassica napus HOM05D008879 ORTHO05D010552 4.0e-06 54.7 43 60.5
BraA04t17908Z Brassica rapa HOM05D008879 ORTHO05D010552 4.0e-06 54.7 44 61.4
Aa31LG5G5820 Aethionema arabicum HOM05D008879 ORTHO05D010552 5.2e-06 54.3 44 59.1
COL.COLO4_17611 Corchorus olitorius HOM05D017499 ORTHO05D010552 6.8e-06 53.9 64 40.6
Sp4g13570 Schrenkiella parvula HOM05D008879 ORTHO05D010552 6.8e-06 53.9 43 60.5
CARHR124660 Cardamine hirsuta HOM05D008879 ORTHO05D010552 8.8e-06 53.5 43 60.5


User provided reference genes

Program Settings