Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029561 Camellia sinensis var. sinensis HOM05D002663 ORTHO05D002988 3.4e-42 174.5 83 100.0
Hma1.2p1_1651F.1_g295770 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 2.7e-10 68.6 63 54.0
COL.COLO4_08048 Corchorus olitorius HOM05D002663 ORTHO05D002988 7.7e-10 67.0 39 76.9
vmacro02520 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 7.7e-10 67.0 37 81.1
Rhsim13G0018700 Rhododendron simsii HOM05D002663 ORTHO05D002988 1.3e-09 66.2 37 81.1
CSS0004482 Camellia sinensis var. sinensis HOM05D002663 ORTHO05D002988 1.7e-09 65.9 37 81.1
Thecc.01G288300 Theobroma cacao HOM05D002663 ORTHO05D002988 1.7e-09 65.9 61 54.1
Gohir.A11G118800 Gossypium hirsutum HOM05D002663 ORTHO05D002988 2.2e-09 65.5 37 78.4
Gohir.D11G123700 Gossypium hirsutum HOM05D002663 ORTHO05D002988 2.2e-09 65.5 37 78.4
Lj1A40T82 Lonicera japonica HOM05D002663 ORTHO05D002988 2.2e-09 65.5 37 81.1
Actinidia00709 Actinidia chinensis HOM05D002663 ORTHO05D002988 2.9e-09 65.1 37 78.4
CiPaw.07G098000 Carya illinoinensis HOM05D002663 ORTHO05D002988 3.8e-09 64.7 36 83.3
QL12p023424 Quercus lobata HOM05D002663 ORTHO05D002988 3.8e-09 64.7 37 75.7
Atru.chr5.1301_Atru.chr5.1302 Acer truncatum HOM05D002663 ORTHO05D002988 6.5e-09 63.9 37 75.7
RcHm_v2.0_Chr6g0292291 Rosa chinensis HOM05D002663 ORTHO05D002988 1.1e-08 63.2 37 81.1
GSVIVG01011028001 Vitis vinifera HOM05D002663 ORTHO05D002988 1.1e-08 63.2 37 78.4
FvH4_2g24450 Fragaria vesca HOM05D002663 ORTHO05D002988 1.9e-08 62.4 37 81.1
FAN20G1839 Fragaria x ananassa HOM05D000115 ORTHO05D001535 1.9e-08 62.4 37 81.1
FAN24G0935 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.9e-08 62.4 37 81.1
FAN27G1532 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.9e-08 62.4 37 81.1
MD11G1296300 Malus domestica HOM05D002663 ORTHO05D002988 1.9e-08 62.4 37 78.4
TWI14G0131 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 1.9e-08 62.4 61 57.4
DCAR_018373 Daucus carota HOM05D002663 ORTHO05D002988 3.2e-08 61.6 37 75.7
Cpa.g.sc9.146 Carica papaya HOM05D002663 ORTHO05D002988 4.2e-08 61.2 37 75.7
Cfa006059 Carpinus fangiana HOM05D002663 ORTHO05D002988 7.2e-08 60.5 37 75.7
TAR362G0766 Trochodendron aralioides HOM05D002663 ORTHO05D002988 7.2e-08 60.5 42 66.7
Haze_04793 Corylus avellana HOM05D002663 ORTHO05D002988 9.4e-08 60.1 37 73.0
FAN20G1908 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.4e-08 60.1 37 78.4
Manes.05G070100 Manihot esculenta HOM05D002663 ORTHO05D002988 9.4e-08 60.1 61 54.1
Potri.015G042100 Populus trichocarpa HOM05D002663 ORTHO05D002988 9.4e-08 60.1 37 75.7
arahy.Tifrunner.gnm1.ann1.IMR5XM Arachis hypogaea HOM05D002663 ORTHO05D002988 1.6e-07 59.3 61 49.2
arahy.Tifrunner.gnm1.ann1.JDYV4L Arachis hypogaea HOM05D002663 ORTHO05D002988 1.6e-07 59.3 61 49.2
ECA248G0286 Erigeron canadensis HOM05D002663 ORTHO05D002988 2.1e-07 58.9 37 67.6
HanXRQChr11g0334821 Helianthus annuus HOM05D002663 ORTHO05D002988 2.1e-07 58.9 37 67.6
Medtr8g088160 Medicago truncatula HOM05D002663 ORTHO05D002988 2.1e-07 58.9 37 70.3
Prupe.8G250200 Prunus persica HOM05D002663 ORTHO05D002988 2.1e-07 58.9 37 73.0
Hund05368 Selenicereus undatus HOM05D002663 ORTHO05D002988 3.6e-07 58.2 37 67.6
Oeu001452.1 Olea europaea HOM05D002663 ORTHO05D002988 4.7e-07 57.8 37 67.6
Os11g0645200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 4.7e-07 57.8 38 68.4
Sabra15G0051000 Salix brachista HOM05D002663 ORTHO05D002988 4.7e-07 57.8 37 73.0
Sabra15G0054700 Salix brachista HOM05D002663 ORTHO05D002988 4.7e-07 57.8 37 73.0
Sabra15G0061200 Salix brachista HOM05D002663 ORTHO05D002988 4.7e-07 57.8 37 73.0
Dinv11283 Davidia involucrata HOM05D002663 ORTHO05D002988 6.1e-07 57.4 37 70.3
Lj4g0008753 Lotus japonicus HOM05D002663 ORTHO05D002988 6.1e-07 57.4 61 45.9
SEGI_22463 Sequoiadendron giganteum HOM05D002663 ORTHO05D002988 8.0e-07 57.0 37 67.6
Ca_17862_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 1.0e-06 56.6 39 64.1
Glyma.05G165200 Glycine max HOM05D002663 ORTHO05D002988 1.0e-06 56.6 61 47.5
Glyma.08G122600 Glycine max HOM05D002663 ORTHO05D002988 1.0e-06 56.6 61 47.5
Lsat_1_v5_gn_5_189660 Lactuca sativa HOM05D002663 ORTHO05D002988 1.0e-06 56.6 37 62.2
MBI19_g25933_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 1.0e-06 56.6 39 59.0
Nitab4.5_0001651g0140 Nicotiana tabacum HOM05D002663 ORTHO05D002988 1.0e-06 56.6 37 67.6
Nitab4.5_0010231g0020 Nicotiana tabacum HOM05D002663 ORTHO05D002988 1.4e-06 56.2 37 64.9
CANSAT25G2471 Cannabis sativa HOM05D002663 ORTHO05D002988 1.8e-06 55.8 37 73.0
Nn3g21225 Nelumbo nucifera HOM05D002663 ORTHO05D002988 1.8e-06 55.8 37 67.6
PGR044G1923 Punica granatum HOM05D002663 ORTHO05D002988 1.8e-06 55.8 37 70.3
Lalb_Chr13g0295491 Lupinus albus HOM05D002663 ORTHO05D002988 2.3e-06 55.5 37 62.2
HPP92_011329 Vanilla planifolia HOM05D002663 ORTHO05D002988 2.3e-06 55.5 37 62.2
CAN.G853.44 Capsicum annuum HOM05D002663 ORTHO05D002988 3.0e-06 55.1 40 57.5
CDE05G0856 Ceratophyllum demersum HOM05D000039 ORTHO05D002988 3.0e-06 55.1 37 64.9
AUR62034595 Chenopodium quinoa HOM05D002663 ORTHO05D002988 3.0e-06 55.1 37 73.0
Psat7g065720 Pisum sativum HOM05D002663 ORTHO05D002988 3.0e-06 55.1 37 67.6
CDE05G2057 Ceratophyllum demersum HOM05D002663 ORTHO05D002988 4.0e-06 54.7 37 67.6
AUR62036674 Chenopodium quinoa HOM05D002663 ORTHO05D002988 4.0e-06 54.7 37 73.0
AUR62044300 Chenopodium quinoa HOM05D002663 ORTHO05D002988 4.0e-06 54.7 37 73.0
Peaxi162Scf00006g03625 Petunia axillaris HOM05D002663 ORTHO05D002988 4.0e-06 54.7 37 62.2
Phvul.002G245400 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 4.0e-06 54.7 61 44.3
CAN.G806.1 Capsicum annuum HOM05D002663 ORTHO05D002988 5.2e-06 54.3 37 62.2
VMungo0251G0385 Vigna mungo HOM05D002663 ORTHO05D002988 5.2e-06 54.3 61 44.3
Solyc09g074310.3 Solanum lycopersicum HOM05D002663 ORTHO05D002988 6.8e-06 53.9 37 62.2
Sopen09g029140 Solanum pennellii HOM05D002663 ORTHO05D002988 6.8e-06 53.9 37 62.2
TPR.G6748 Trifolium pratense HOM05D002663 ORTHO05D002988 6.8e-06 53.9 37 64.9


User provided reference genes

Program Settings