Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 8.3e-232 806.6 385 100.0
CSS0043929 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 2.6e-140 502.7 328 77.4
CSS0033232 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 1.7e-128 463.4 338 73.7
Rhsim04G0208100 Rhododendron simsii HOM05D013111 ORTHO05D013046 1.5e-92 344.0 400 46.8
vmacro10470 Vaccinium macrocarpon HOM05D013111 ORTHO05D013046 6.4e-91 338.6 394 46.4
Rhsim11G0059800 Rhododendron simsii HOM05D013111 ORTHO05D013046 1.2e-52 211.5 322 40.1
vmacro20887 Vaccinium macrocarpon HOM05D013111 ORTHO05D013046 3.8e-51 206.5 274 43.8
vmacro22846 Vaccinium macrocarpon HOM05D013111 ORTHO05D013046 3.0e-48 196.8 295 40.0
Rhsim11G0040000 Rhododendron simsii HOM05D013111 ORTHO05D013046 7.4e-47 192.2 341 35.5
CSS0012725 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 2.5e-39 167.2 318 36.8
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 3.3e-39 166.8 387 33.1
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 1.5e-36 157.9 293 36.2
Rhsim04G0224100 Rhododendron simsii HOM05D013111 ORTHO05D013046 3.8e-35 153.3 199 44.7
Rhsim05G0135400 Rhododendron simsii HOM05D013111 ORTHO05D013046 1.2e-33 148.3 324 34.6
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 5.7e-31 139.4 298 34.9
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 2.6e-23 114.0 330 28.2
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.3e-21 106.3 256 33.6
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 9.1e-21 105.5 272 30.5
Rhsim10G0208600 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.5e-20 103.6 307 28.3
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 1.7e-19 101.3 378 29.9
QL10p008459 Quercus lobata HOM05D013052 ORTHO05D012831 1.7e-19 101.3 379 29.3
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.9e-19 100.5 309 25.9
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 8.5e-19 99.0 378 29.6
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.5e-18 98.2 263 29.3
QL01p000349 Quercus lobata HOM05D013052 ORTHO05D012831 9.4e-18 95.5 383 29.0
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 9.4e-18 95.5 285 27.0
Rhsim10G0208800 Rhododendron simsii HOM05D012885 ORTHO05D010877 9.4e-18 95.5 262 28.6
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 1.8e-16 91.3 214 35.0
Aqoxy7G03986 Aquilegia oxysepala HOM05D029118 ORTHO05D026731 3.0e-16 90.5 268 26.9
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.4e-15 86.7 256 29.7
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 7.5e-15 85.9 255 28.6
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.3e-14 85.1 255 30.6
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 1.7e-14 84.7 261 26.8
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.7e-14 84.7 289 29.8
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.2e-14 84.3 231 31.2
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 2.2e-14 84.3 232 30.6
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 8.2e-14 82.4 231 30.7
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.8e-13 81.3 244 25.8
Hund00487 Selenicereus undatus HOM05D064078 ORTHO05D012831 3.1e-13 80.5 251 29.9
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 5.3e-13 79.7 236 25.8
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 5.3e-13 79.7 281 26.0
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 5.3e-13 79.7 326 30.1
QL10p008435 Quercus lobata HOM05D013052 ORTHO05D012831 5.9e-12 76.3 373 26.0
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 1.0e-11 75.5 346 25.7
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 2.5e-10 70.9 224 26.3
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 3.2e-10 70.5 293 26.6
QL11p036388 Quercus lobata HOM05D010066 ORTHO05D009743 4.2e-10 70.1 254 31.1
QL11p038460 Quercus lobata HOM05D010066 ORTHO05D009743 9.4e-10 68.9 267 25.1
QL11p026821 Quercus lobata HOM05D061260 ORTHO05D009743 1.2e-09 68.6 318 26.1
QL11p026859 Quercus lobata HOM05D061260 ORTHO05D009743 1.2e-09 68.6 199 29.1
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 6.1e-09 66.2 252 26.2
Rhsim07G0240000 Rhododendron simsii HOM05D013052 ORTHO05D012831 6.1e-09 66.2 264 28.0
RhsimUnG0035000 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.0e-08 63.9 249 26.9
COL.COLO4_24092 Corchorus olitorius HOM05D014846 ORTHO05D016249 1.2e-07 62.0 247 28.7
Aqoxy2G00744 Aquilegia oxysepala HOM05D002402 ORTHO05D002633 2.0e-07 61.2 135 33.3
BcaC09g51419 Brassica carinata HOM05D000249 ORTHO05D000206 3.4e-07 60.5 141 30.5
BolC1t01306H Brassica oleracea HOM05D000249 ORTHO05D000206 3.4e-07 60.5 141 30.5
QL11p055992 Quercus lobata HOM05D013052 ORTHO05D012831 3.4e-07 60.5 276 24.6
CARHR225340 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.4e-07 60.1 228 25.4
BcaNung01786 Brassica carinata HOM05D000249 ORTHO05D000206 7.5e-07 59.3 139 32.4
CSS0041179 Camellia sinensis var. sinensis HOM05D052153 ORTHO05D013046 7.5e-07 59.3 89 33.7
Gohir.D06G038800 Gossypium hirsutum HOM05D009781 ORTHO05D011819 7.5e-07 59.3 180 31.7
Gohir.A11G324800 Gossypium hirsutum HOM05D009781 ORTHO05D011819 9.8e-07 58.9 193 30.1
CSS0005929 Camellia sinensis var. sinensis HOM05D052153 ORTHO05D013046 1.3e-06 58.5 89 33.7
Thhalv10026886m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.2e-06 57.8 91 35.2
Ah.01g016440 Amaranthus hybridus HOM05D036488 ORTHO05D021181 2.8e-06 57.4 136 28.7
A01p03420 Brassica napus HOM05D000249 ORTHO05D000206 2.8e-06 57.4 143 29.4
A01p11270 Brassica napus HOM05D000249 ORTHO05D000206 2.8e-06 57.4 141 30.5
Haze_19844 Corylus avellana HOM05D027064 ORTHO05D009743 2.8e-06 57.4 300 25.7
QL01p003691 Quercus lobata HOM05D010066 ORTHO05D009743 2.8e-06 57.4 166 30.1
AL7G16100 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.7e-06 57.0 92 35.9
arahy.Tifrunner.gnm1.ann1.PBP9SE Arachis hypogaea HOM05D008504 ORTHO05D010707 3.7e-06 57.0 248 24.6
arahy.Tifrunner.gnm1.ann1.UJY401 Arachis hypogaea HOM05D008504 ORTHO05D010707 3.7e-06 57.0 248 24.6
BraA01t00329Z Brassica rapa HOM05D000249 ORTHO05D000206 3.7e-06 57.0 143 29.4
Gohir.D06G038600 Gossypium hirsutum HOM05D009781 ORTHO05D011819 3.7e-06 57.0 235 24.7
A01p11300 Brassica napus HOM05D000249 ORTHO05D000206 4.8e-06 56.6 141 30.5
C01p03730 Brassica napus HOM05D000249 ORTHO05D000206 4.8e-06 56.6 92 33.7
C03p82270 Brassica napus HOM05D000249 ORTHO05D000206 4.8e-06 56.6 237 24.5
BolC1t00365H Brassica oleracea HOM05D000249 ORTHO05D000206 4.8e-06 56.6 92 33.7
BolC3t20525H Brassica oleracea HOM05D000249 ORTHO05D000206 4.8e-06 56.6 237 24.5
BraA01t01074Z Brassica rapa HOM05D000249 ORTHO05D000206 4.8e-06 56.6 141 30.5
COL.COLO4_31293 Corchorus olitorius HOM05D001422 ORTHO05D001321 6.3e-06 56.2 106 35.8
Ah.01g016360 Amaranthus hybridus HOM05D036488 ORTHO05D021181 8.3e-06 55.8 136 28.7
COL.COLO4_09593 Corchorus olitorius HOM05D014846 ORTHO05D016249 8.3e-06 55.8 216 26.4


User provided reference genes

Program Settings