Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.3e-148 528.5 290 100.0
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.0e-145 519.2 292 98.6
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.3e-107 393.7 227 83.7
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 3.7e-107 392.1 225 84.4
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.5e-105 386.7 218 86.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 7.6e-105 384.4 214 84.6
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 7.6e-105 384.4 228 80.7
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.3e-104 383.6 219 84.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-103 379.0 216 81.9
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 9.3e-103 377.5 216 81.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 8.7e-101 370.9 219 81.7
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.5e-100 370.2 220 79.5
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.5e-100 370.2 220 79.5
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.5e-100 370.2 216 80.6
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.9e-100 369.8 224 79.9
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.3e-99 367.1 220 79.5
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.8e-99 365.9 213 82.2
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.8e-99 365.2 220 79.1
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 6.3e-99 364.8 213 82.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 6.3e-99 364.8 220 79.1
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 2.4e-98 362.8 215 80.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 3.1e-98 362.5 220 79.5
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 3.1e-98 362.5 215 79.5
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 4.1e-98 362.1 220 78.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.1e-98 362.1 217 80.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.3e-98 361.7 219 78.5
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 9.0e-98 360.9 220 79.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.9e-97 358.2 217 78.8
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.0e-96 357.5 219 78.1
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.2e-96 356.3 217 78.3
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.2e-96 356.3 223 77.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 2.2e-96 356.3 222 76.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.2e-96 356.3 221 76.9
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.9e-96 355.9 259 69.9
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.8e-96 355.5 218 78.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.8e-96 355.5 214 79.4
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.5e-96 354.8 258 69.4
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.5e-96 354.4 213 80.3
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-95 354.0 213 79.8
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.9e-95 353.2 221 76.0
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.9e-95 353.2 262 69.5
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 5.5e-95 351.7 211 79.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.5e-95 351.7 221 76.0
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 7.2e-95 351.3 223 76.2
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 7.2e-95 351.3 215 77.7
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 7.2e-95 351.3 214 76.2
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 9.4e-95 350.9 211 76.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.7e-94 349.4 212 80.2
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 2.7e-94 349.4 213 79.3
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 4.6e-94 348.6 214 78.5
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.1e-94 348.2 213 77.0
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.0e-93 347.4 218 76.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.0e-93 347.4 213 78.4
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.0e-93 347.4 213 77.0
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.4e-93 347.1 212 77.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.8e-93 346.7 218 78.9
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.8e-93 346.7 218 78.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.8e-93 346.7 218 76.1
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.7e-93 344.7 241 71.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 6.7e-93 344.7 225 73.3
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-92 344.0 213 75.6
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.5e-92 343.6 212 77.4
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.4e-92 342.0 222 75.2
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 4.4e-92 342.0 220 75.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 7.4e-92 341.3 213 77.9
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.7e-91 340.1 208 79.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.2e-91 339.7 218 76.6
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 2.2e-91 339.7 222 75.2
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.2e-91 339.7 257 66.5
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 2.2e-91 339.7 214 76.2
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 2.8e-91 339.3 217 75.6
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 3.7e-91 339.0 218 74.3
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.8e-91 338.6 216 75.9
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.3e-91 338.2 219 73.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 8.2e-91 337.8 252 67.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 8.2e-91 337.8 213 76.1
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-90 337.4 218 76.1
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-90 337.4 218 76.1
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.1e-90 337.4 259 65.6
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.4e-90 337.0 216 73.1
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.8e-90 336.7 225 72.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.8e-90 336.7 211 75.8
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.8e-90 336.7 214 75.2
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-90 336.3 218 75.7
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 5.3e-90 335.1 219 74.9
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 5.3e-90 335.1 219 74.9
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 5.3e-90 335.1 219 74.9
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 5.3e-90 335.1 218 75.7
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 6.9e-90 334.7 220 74.5
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 6.9e-90 334.7 220 74.5
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 9.1e-90 334.3 214 75.2
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.2e-89 334.0 218 73.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.5e-89 333.6 225 72.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.0e-89 333.2 221 74.2
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.6e-89 332.8 218 74.3
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 7.7e-89 331.3 209 76.1
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.7e-89 331.3 225 72.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.3e-88 330.5 225 71.1
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 2.9e-88 329.3 209 76.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.9e-88 329.3 217 72.4
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.9e-88 329.3 213 75.1
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.8e-88 328.9 211 74.9
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 6.5e-88 328.2 209 76.1
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.4e-87 327.0 222 73.4
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 3.2e-87 325.9 221 72.4
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 5.5e-87 325.1 209 72.7
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 9.4e-87 324.3 215 73.5
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 9.4e-87 324.3 217 71.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.6e-86 323.6 221 72.9
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.1e-86 323.2 213 75.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 6.1e-86 321.6 220 74.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 6.1e-86 321.6 220 74.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.9e-86 321.2 211 73.0
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.8e-85 320.1 220 73.6
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-85 319.7 220 72.7
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.3e-85 319.7 216 70.8
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 8.8e-85 317.8 215 71.6
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.5e-84 317.0 216 69.9
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 4.4e-84 315.5 216 69.9
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 5.7e-84 315.1 207 72.9
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.7e-83 313.5 213 73.2
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 3.7e-83 312.4 220 72.3
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 4.8e-83 312.0 220 72.3
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.8e-82 310.1 256 62.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.5e-81 305.8 175 84.0
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.5e-81 305.4 211 71.1
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.2e-80 303.1 211 69.7
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 6.5e-80 301.6 211 69.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.5e-79 298.5 176 80.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.1e-78 296.6 174 79.9
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.0e-78 294.7 213 66.7
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.3e-77 293.1 219 64.4
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-77 293.1 219 64.4
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.0e-77 292.4 215 66.0
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.2e-77 292.0 219 64.8
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.2e-77 292.0 219 64.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.2e-77 292.0 219 64.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.2e-77 292.0 219 64.4
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 5.2e-77 292.0 203 70.4
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 5.7e-76 288.5 223 65.0
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 3.1e-74 282.7 206 70.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-71 273.9 216 63.4
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 4.0e-69 265.8 224 58.5
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.2e-67 260.0 222 61.3
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.9e-63 246.9 202 58.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 6.8e-61 238.4 216 56.5
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.7e-59 232.6 267 50.9
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.3e-59 231.5 219 55.7
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.1e-58 231.1 221 57.0
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.4e-58 230.7 136 80.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.1e-58 229.2 136 80.1
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 5.6e-55 218.8 132 78.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.4e-52 209.5 212 49.1
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-51 206.5 223 51.6
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.3e-48 196.8 108 86.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.7e-43 180.6 176 57.4
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.8e-41 171.8 160 50.0
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.3e-31 138.7 75 90.7
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.1e-21 106.7 74 62.2
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 4.0e-21 106.3 77 64.9
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 8.7e-16 88.6 68 61.8
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.5e-15 87.0 89 46.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 8.1e-14 82.0 88 45.5
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.4e-13 81.3 72 59.7
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-08 64.7 44 70.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.0e-08 63.5 81 48.1
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 8.7e-08 62.0 40 70.0
RhsimUnG0210800 Rhododendron simsii HOM05D003569 ORTHO05D004178 8.1e-06 55.5 40 70.0


User provided reference genes

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