Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.1e-138 494.2 259 100.0
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.3e-119 430.6 262 90.1
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.2e-114 416.8 259 86.9
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 1.9e-91 339.7 259 73.0
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 5.8e-88 328.2 262 71.4
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 2.3e-84 316.2 260 68.1
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 9.9e-80 300.8 262 66.8
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 9.9e-80 300.8 261 64.8
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 2.9e-79 299.3 262 66.4
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.9e-78 296.6 261 63.6
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.4e-78 296.2 259 65.6
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 4.2e-78 295.4 259 65.6
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.4e-78 295.0 246 65.4
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 9.3e-78 294.3 260 64.2
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.9e-77 291.2 261 63.6
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 1.3e-76 290.4 259 62.5
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.3e-76 289.7 261 63.6
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 3.0e-76 289.3 262 62.6
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 3.9e-76 288.9 265 64.5
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 8.7e-76 287.7 268 62.7
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.1e-75 287.3 248 64.1
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 3.3e-75 285.8 260 61.9
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 4.3e-75 285.4 267 62.5
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 5.6e-75 285.0 251 64.9
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 7.4e-75 284.6 249 62.7
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 3.7e-74 282.3 261 59.0
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 2.4e-73 279.6 252 63.9
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 3.1e-73 279.3 261 59.8
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 4.0e-73 278.9 254 60.2
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 5.3e-73 278.5 258 63.2
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 6.9e-73 278.1 264 59.1
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 2.6e-72 276.2 259 59.8
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.4e-72 275.8 255 63.9
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 5.8e-72 275.0 257 63.0
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 5.8e-72 275.0 256 59.4
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 2.2e-71 273.1 268 60.1
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 2.9e-71 272.7 266 59.8
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 2.9e-71 272.7 248 61.7
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.9e-71 271.9 259 59.5
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.9e-71 271.9 248 62.5
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 8.4e-71 271.2 248 62.5
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 3.2e-70 269.2 267 58.1
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 3.2e-70 269.2 267 60.3
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 4.2e-70 268.9 259 60.6
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 4.2e-70 268.9 242 64.0
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 5.5e-70 268.5 243 60.1
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 1.6e-69 266.9 251 60.6
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.6e-69 265.4 154 90.9
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 6.0e-69 265.0 250 59.6
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 1.3e-68 263.8 254 61.4
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.5e-67 260.4 271 57.2
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 1.6e-66 256.9 266 56.4
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 1.6e-66 256.9 247 59.9
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 2.1e-66 256.5 250 59.6
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 6.2e-66 255.0 257 61.1
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 1.4e-65 253.8 253 58.1
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 1.4e-65 253.8 266 58.6
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.4e-65 253.8 258 57.8
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.4e-65 253.8 253 58.1
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.8e-65 253.4 253 58.1
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 1.8e-65 253.4 249 62.7
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 2.4e-65 253.1 251 59.8
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 3.1e-65 252.7 269 56.1
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 4.0e-65 252.3 246 58.1
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 6.9e-65 251.5 252 57.5
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 2.0e-64 250.0 264 54.5
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 2.0e-64 250.0 280 55.0
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 1.0e-63 247.7 252 56.7
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 1.3e-63 247.3 254 56.7
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.2e-63 246.5 150 87.3
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 2.2e-63 246.5 221 66.1
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 3.8e-63 245.7 254 56.3
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 3.8e-63 245.7 254 56.3
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 4.9e-63 245.4 254 55.9
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 3.2e-62 242.7 250 57.6
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 7.1e-62 241.5 251 56.2
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 9.3e-62 241.1 260 55.0
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 2.1e-61 240.0 260 54.6
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.0e-60 237.7 250 55.2
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.9e-59 233.4 226 56.6
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.5e-59 233.0 248 54.4
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 5.7e-59 231.9 257 54.9
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 1.3e-58 230.7 222 64.0
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 1.6e-58 230.3 233 58.8
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 4.8e-58 228.8 262 56.1
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.1e-57 227.6 201 64.7
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 9.0e-57 224.6 220 58.2
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.5e-56 223.8 245 55.1
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.0e-56 223.4 160 76.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.2e-55 219.9 263 52.1
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.9e-54 216.9 258 52.3
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 2.5e-54 216.5 248 53.2
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 4.2e-54 215.7 250 54.0
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 7.2e-54 214.9 243 53.5
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 4.6e-53 212.2 249 51.8
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 4.3e-51 205.7 241 54.4
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 2.2e-50 203.4 217 55.3
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 3.7e-50 202.6 253 51.4
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 2.4e-49 199.9 206 56.3
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 4.5e-48 195.7 184 60.3
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.0e-47 194.5 118 90.7
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.0e-47 194.5 118 90.7
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 2.9e-47 193.0 257 45.9
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 5.1e-44 182.2 249 45.4
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.7e-42 177.2 158 63.3
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 3.5e-40 169.5 248 45.6
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.1e-38 164.5 261 42.5
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 2.2e-34 150.2 273 38.5
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 4.7e-29 132.5 116 63.8
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 9.1e-25 118.2 251 35.1
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 1.3e-23 114.4 161 46.0
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.5e-22 110.2 248 31.0
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.2e-19 101.3 217 35.5
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 3.1e-17 93.2 169 39.6
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 3.8e-15 86.3 71 63.4
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 6.6e-15 85.5 335 27.8
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 3.2e-09 66.6 79 45.6
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 3.2e-09 66.6 126 41.3
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 2.7e-08 63.5 57 56.1
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 5.9e-08 62.4 109 41.3


User provided reference genes

Program Settings