Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029480 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D110723 3.7e-61 238.0 120 100.0
CSS0040402 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D112689 6.5e-26 120.9 123 61.8
CSS0004560 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109985 2.1e-24 115.9 72 90.3
CSS0013923 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109872 2.1e-24 115.9 130 55.4
TAR628G1517 Trochodendron aralioides HOM05D001549 ORTHO05D003098 7.2e-09 64.3 31 90.3
Rhsim10G0125500 Rhododendron simsii HOM05D001549 ORTHO05D003098 9.5e-09 63.9 33 84.8
CSS0023079 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D003098 1.2e-08 63.5 29 96.6
CANSAT01G2865 Cannabis sativa HOM05D001549 ORTHO05D003098 1.2e-08 63.5 29 96.6
Ciclev10024926m.g Citrus clementina HOM05D001549 ORTHO05D003098 2.8e-08 62.4 29 93.1
Nn5g29397 Nelumbo nucifera HOM05D001549 ORTHO05D003098 2.8e-08 62.4 29 93.1
Sed0004252 Sechium edule HOM05D001549 ORTHO05D003098 2.8e-08 62.4 33 84.8
Dinv39910 Davidia involucrata HOM05D001549 ORTHO05D003098 4.7e-08 61.6 29 93.1
FAN19G2984 Fragaria x ananassa HOM05D001549 ORTHO05D003098 4.7e-08 61.6 37 75.7
FAN28G2359 Fragaria x ananassa HOM05D001549 ORTHO05D003098 4.7e-08 61.6 37 75.7
vmacro08940 Vaccinium macrocarpon HOM05D001549 ORTHO05D003098 4.7e-08 61.6 29 89.7
Atru.chr3.453 Acer truncatum HOM05D001549 ORTHO05D003098 8.0e-08 60.8 29 89.7
FvH4_1g14740 Fragaria vesca HOM05D001549 ORTHO05D003098 1.0e-07 60.5 33 81.8
FAN26G1027 Fragaria x ananassa HOM05D001549 ORTHO05D003098 1.0e-07 60.5 33 81.8
MD15G1274800 Malus domestica HOM05D001549 ORTHO05D003098 1.0e-07 60.5 33 81.8
CiPaw.01G027000 Carya illinoinensis HOM05D001549 ORTHO05D003098 1.4e-07 60.1 29 89.7
Prupe.7G143000 Prunus persica HOM05D001549 ORTHO05D003098 1.4e-07 60.1 33 81.8
RcHm_v2.0_Chr1g0319111 Rosa chinensis HOM05D001549 ORTHO05D003098 1.4e-07 60.1 33 81.8
RcHm_v2.0_Chr2g0103681 Rosa chinensis HOM05D001549 ORTHO05D003098 1.4e-07 60.1 33 81.8
FAN23G0473 Fragaria x ananassa HOM05D001549 ORTHO05D003098 1.8e-07 59.7 51 58.8
PSO675G5453 Papaver somniferum HOM05D001549 ORTHO05D003098 1.8e-07 59.7 29 86.2
GSVIVG01005084001 Vitis vinifera HOM05D001549 ORTHO05D003098 2.3e-07 59.3 29 86.2
Actinidia12081 Actinidia chinensis HOM05D001549 ORTHO05D003098 3.0e-07 58.9 29 89.7
Haze_15180 Corylus avellana HOM05D001549 ORTHO05D003098 3.0e-07 58.9 29 89.7
Eucgr.I01019 Eucalyptus grandis HOM05D001549 ORTHO05D003098 3.0e-07 58.9 29 86.2
MBI16_g19886_MAGBIO Magnolia biondii HOM05D001549 ORTHO05D003098 3.0e-07 58.9 31 80.6
Sc16g0001540 Simmondsia chinensis HOM05D001549 ORTHO05D003098 3.0e-07 58.9 31 80.6
Cfa004221 Carpinus fangiana HOM05D001549 ORTHO05D003098 4.0e-07 58.5 29 89.7
Nitab4.5_0000108g0230 Nicotiana tabacum HOM05D001549 ORTHO05D003098 4.0e-07 58.5 33 81.8
Nitab4.5_0001014g0130 Nicotiana tabacum HOM05D001549 ORTHO05D003098 4.0e-07 58.5 33 81.8
TWI73G0625 Tripterygium wilfordii HOM05D001549 ORTHO05D003098 4.0e-07 58.5 29 86.2
QL06p043875 Quercus lobata HOM05D001549 ORTHO05D003098 5.2e-07 58.2 29 86.2
ClCG02G017060 Citrullus lanatus HOM05D001549 ORTHO05D003098 6.8e-07 57.8 33 78.8
MELO3C004423.2 Cucumis melo HOM05D001549 ORTHO05D003098 6.8e-07 57.8 33 78.8
CsaV3_2G003710 Cucumis sativus L. HOM05D001549 ORTHO05D003098 6.8e-07 57.8 33 78.8
Peaxi162Scf00535g00733 Petunia axillaris HOM05D001549 ORTHO05D003098 6.8e-07 57.8 32 84.4
Lj4C136G10 Lonicera japonica HOM05D001549 ORTHO05D003098 1.2e-06 57.0 37 70.3
Potri.007G035900 Populus trichocarpa HOM05D001549 ORTHO05D003098 1.2e-06 57.0 29 86.2
Cpa.g.sc15.91 Carica papaya HOM05D001549 ORTHO05D003098 1.5e-06 56.6 29 82.8
Lalb_Chr16g0388481 Lupinus albus HOM05D001549 ORTHO05D003098 1.5e-06 56.6 51 54.9
MD02G1160500 Malus domestica HOM05D001549 ORTHO05D003098 1.5e-06 56.6 33 75.8
Manes.13G130700 Manihot esculenta HOM05D001549 ORTHO05D003098 1.5e-06 56.6 29 86.2
Aqoxy6G00926 Aquilegia oxysepala HOM05D001549 ORTHO05D003098 2.0e-06 56.2 29 82.8
DCAR_025681 Daucus carota HOM05D001549 ORTHO05D003098 2.0e-06 56.2 31 77.4
Gohir.A11G045300 Gossypium hirsutum HOM05D001549 ORTHO05D003098 2.0e-06 56.2 29 82.8
Gohir.D11G048800 Gossypium hirsutum HOM05D001549 ORTHO05D003098 2.0e-06 56.2 29 82.8
Sabra07G0031400 Salix brachista HOM05D001549 ORTHO05D003098 2.6e-06 55.8 29 82.8
CAN.G836.28 Capsicum annuum HOM05D001549 ORTHO05D003098 3.4e-06 55.5 33 78.8
PGSC0003DMG400010077 Solanum tuberosum HOM05D001549 ORTHO05D003098 3.4e-06 55.5 33 75.8
Gorai.007G052400 Gossypium raimondii HOM05D001549 ORTHO05D003098 4.4e-06 55.1 29 79.3
arahy.Tifrunner.gnm1.ann1.NDG4UC Arachis hypogaea HOM05D001549 ORTHO05D003098 5.7e-06 54.7 31 74.2
arahy.Tifrunner.gnm1.ann1.WXMK30 Arachis hypogaea HOM05D001549 ORTHO05D003098 5.7e-06 54.7 31 74.2
Cc07_g05500 Coffea canephora HOM05D001549 ORTHO05D003098 5.7e-06 54.7 33 75.8
COL.COLO4_11319 Corchorus olitorius HOM05D001549 ORTHO05D003098 5.7e-06 54.7 29 79.3
SHI08735 Sapria himalayana HOM05D001549 ORTHO05D003098 7.5e-06 54.3 29 79.3
THA.LOC104827094 Tarenaya hassleriana HOM05D001549 ORTHO05D003098 7.5e-06 54.3 29 82.8
Medtr8g079030 Medicago truncatula HOM05D001549 ORTHO05D003098 9.8e-06 53.9 33 69.7
Psat4g089680 Pisum sativum HOM05D001549 ORTHO05D003098 9.8e-06 53.9 33 69.7
Thecc.01G047400 Theobroma cacao HOM05D001549 ORTHO05D003098 9.8e-06 53.9 29 79.3


User provided reference genes

Program Settings