Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.1e-195 686.4 324 100.0
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.9e-165 585.9 309 87.1
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 3.4e-162 575.1 314 83.8
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 4.2e-160 568.2 309 82.8
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 7.9e-159 563.9 308 82.8
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.9e-158 561.6 304 83.2
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 5.1e-158 561.2 311 82.6
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 5.1e-158 561.2 314 81.2
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 5.1e-158 561.2 309 83.2
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.1e-157 560.1 309 81.6
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 4.3e-157 558.1 309 81.2
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 9.6e-157 557.0 309 83.5
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-156 555.8 322 80.7
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-156 555.8 322 80.7
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 3.7e-156 555.1 311 80.4
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 3.7e-156 555.1 309 81.6
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.7e-156 555.1 312 80.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 4.8e-156 554.7 309 82.5
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.8e-156 554.7 309 81.2
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 6.2e-156 554.3 311 81.7
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 6.2e-156 554.3 309 81.2
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 8.1e-156 553.9 312 81.7
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.4e-155 552.4 324 80.2
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 3.1e-155 552.0 309 81.2
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.0e-155 551.6 307 81.4
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 5.3e-155 551.2 322 78.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 9.0e-155 550.4 309 82.8
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 9.0e-155 550.4 309 80.6
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.2e-154 550.1 309 80.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 4.5e-154 548.1 309 80.6
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.8e-154 547.7 310 82.3
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.3e-153 546.6 318 80.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.3e-153 546.6 309 80.9
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.3e-153 546.6 308 81.2
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 1.3e-153 546.6 304 83.9
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.3e-153 546.6 309 79.6
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.7e-153 546.2 310 79.7
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.7e-153 546.2 306 79.7
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.7e-153 546.2 304 83.6
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 2.2e-153 545.8 312 81.7
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.2e-153 545.8 316 79.1
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.9e-153 545.4 312 79.5
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.8e-153 545.0 314 80.3
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 3.8e-153 545.0 304 83.6
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 6.4e-153 544.3 312 79.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.4e-153 544.3 312 79.8
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.4e-153 544.3 312 79.2
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 6.4e-153 544.3 309 80.6
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.4e-152 543.1 321 77.9
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.9e-152 542.7 319 76.2
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.9e-152 542.7 319 76.2
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 9.3e-152 540.4 318 78.9
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.6e-151 539.7 319 76.2
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 2.1e-151 539.3 313 79.6
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.7e-151 538.9 309 80.6
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 3.5e-151 538.5 309 79.6
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.0e-150 537.0 319 77.1
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.0e-150 537.0 309 77.7
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.3e-150 536.6 312 79.5
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.8e-150 536.2 305 81.3
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.3e-150 535.8 311 79.4
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 3.0e-150 535.4 311 78.1
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 3.0e-150 535.4 309 78.0
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 6.7e-150 534.3 309 77.0
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 6.7e-150 534.3 309 78.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 1.1e-149 533.5 311 78.5
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 1.1e-149 533.5 309 78.0
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.1e-149 533.5 311 78.1
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.5e-149 533.1 311 77.8
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.5e-149 532.3 312 77.6
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 5.6e-149 531.2 311 78.5
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 5.6e-149 531.2 311 78.8
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.6e-149 531.2 307 79.2
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 9.6e-149 530.4 309 76.7
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 1.3e-148 530.0 316 76.6
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.6e-148 529.6 309 78.3
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.1e-148 529.3 311 78.5
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 2.8e-148 528.9 310 76.5
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.8e-148 528.1 316 76.6
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.8e-148 528.1 315 76.2
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 8.2e-148 527.3 311 77.8
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.2e-146 523.5 308 76.9
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.5e-146 523.1 319 75.5
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 3.4e-146 521.9 310 75.8
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.8e-146 521.2 310 77.4
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 5.8e-146 521.2 311 74.3
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 2.2e-145 519.2 311 75.9
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.8e-145 518.5 309 77.0
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.9e-144 516.2 311 74.3
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.9e-144 516.2 318 73.3
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 3.2e-144 515.4 309 76.7
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 4.2e-144 515.0 311 74.6
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 7.1e-144 514.2 309 76.1
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 7.1e-144 514.2 312 76.0
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.6e-143 513.1 320 77.5
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 4.8e-140 501.5 304 76.6
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.4e-139 500.0 320 73.1
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.2e-137 492.7 313 72.5
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-136 490.0 306 74.2
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 3.6e-135 485.3 308 72.1
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.1e-134 481.5 311 72.3
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.3e-133 478.4 312 72.8
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.5e-130 469.9 310 66.5
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 7.2e-128 461.1 306 72.2
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 7.9e-127 457.6 312 69.6
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.0e-126 455.7 314 69.4
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 4.4e-125 451.8 304 69.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-124 449.9 329 66.9
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-124 449.9 329 66.9
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.1e-123 447.2 305 65.9
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 2.4e-123 446.0 287 69.0
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 3.5e-122 442.2 277 71.8
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 8.5e-121 437.6 309 64.4
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.1e-120 437.2 315 61.9
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.0e-118 430.6 315 59.4
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-116 423.3 441 51.7
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 3.1e-115 419.1 231 80.5
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.0e-113 414.1 305 61.3
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.8e-108 396.0 315 58.1
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 4.1e-99 365.5 209 78.5
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.2e-98 364.0 204 81.4
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.7e-97 360.1 199 81.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 5.7e-93 345.1 251 66.1
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.3e-92 341.7 216 72.2
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 7.5e-85 318.2 182 80.2
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.9e-83 313.5 176 80.1
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.6e-82 310.5 165 83.0
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 3.9e-81 305.8 312 48.4
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.1e-75 287.7 306 51.6
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.0e-49 199.9 208 48.1
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 8.7e-41 171.8 97 75.3
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.2e-39 165.6 99 77.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.5e-37 161.0 87 80.5
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-35 154.5 105 65.7
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.3e-32 143.3 82 75.6
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-28 131.0 73 79.5
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 8.4e-28 128.6 80 77.5
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.3e-27 125.2 91 64.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 8.7e-25 118.6 309 27.5
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.2e-23 114.0 315 29.5
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 4.6e-18 96.3 65 72.3
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.3e-15 88.2 240 27.5
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 2.0e-13 80.9 312 26.0
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.4e-11 72.0 48 72.9
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 9.4e-11 72.0 41 68.3
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-08 65.1 48 58.3


User provided reference genes

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